05-02-2017
Since my input could contain multiple format types, I use multiple regex to capture them. I see your point but need to redo for each condition. They aren't in every file, but the format is often different.
For example,
A SNP regex would not work for an insertion (comments on each line). Thank you very much for the suggestion and help, it is working ).
Last edited by cmccabe; 05-02-2017 at 08:40 AM..
10 More Discussions You Might Find Interesting
1. Windows & DOS: Issues & Discussions
Hi,
I am currently working on a windows platform (2000 and XP) and was wondering if there are today solutions for the task I have.
I need to print image files onto a variety of inkjet printer models, most epson non-postscript. Some of the models I know but new models are added almost every... (0 Replies)
Discussion started by: jokofix007
0 Replies
2. Shell Programming and Scripting
Hi ,
This script working for fine if pass script-name.sh Jul/10/2007 ,I want to pass 20070710(yyyymmdd) .Please any help it should be appereciated.
use Time::Local;
my $d = $ARGV;
my $t = $ARGV;
my $m = "";
@d = split /\//, $d;
@t = split /:/, $t;
if ( $d eq "Jan" ) { $m = 0 }... (7 Replies)
Discussion started by: akil
7 Replies
3. Shell Programming and Scripting
Hello Friends,
Im trying to write a script to invoke nagios. In order to do this I grep some words that comes from output of some backup scripts. When there is "End-of-tape detected" in directed output logs it should give alarm. First I would like to know if there is any better way to write... (5 Replies)
Discussion started by: EAGL€
5 Replies
4. Shell Programming and Scripting
Hi
I'm writing simple perl script to parse the ftp log as below:
Local directory now /home/user/testing
227 Entering Passive Mode (192,254,19,34,8,228).
125 Data connection already open; Transfer starting.
09-25-09 02:33PM 25333629 abc.tar
09-14-09 12:50PM 18015752... (1 Reply)
Discussion started by: netxus
1 Replies
5. Programming
Hi Perl Guys
I have another perl question
I have the following code that i have written
Getopt::Long::config(qw( permute bundling ));
my $OPT = {};
GetOptions($OPT, qw(
ver=s
help|h
)) or die "options parsing failed";
This will allow the user to do something like... (4 Replies)
Discussion started by: ab52
4 Replies
6. Shell Programming and Scripting
Greetings
I have a file formatted like this:
rhino grey weight=1003;height=231;class=heaviest;histology=9,0,0,8
bird white weight=23;height=88;class=light;histology=7,5,1,0,0
turtle green weight=40;height=9;class=light;histology=6,0,2,0... (2 Replies)
Discussion started by: Twinklefingers
2 Replies
7. Shell Programming and Scripting
The below code works great to parse out a file if the input is in the attached SNP format ">".
perl -ne 'next if $.==1; while(/\t*NC_(\d+)\.\S+g\.(\d+)()>()/g){printf("%d\t%d\t%d\t%s\t%s\n",$1,$2,$2,$3,$4,$5)}' out_position.txt > out_parse.txt
My question is if there is another format in... (10 Replies)
Discussion started by: cmccabe
10 Replies
8. Shell Programming and Scripting
hello,
i have a lot of C old code I'm updating to C11 with tgmath.h for generic math. the old code has very specific types, real and complex, like cabsl, csinhl, etc
usually for simple bulk replacements i would do something simple like this
perl -pi -e 's/cosl/cos/g' *.c
the reference... (0 Replies)
Discussion started by: f77hack
0 Replies
9. Shell Programming and Scripting
logver=56 idseq=63256900099118326 itime=1563205190 devid=FG-5KDTB18800138 devname=LAL-C1-FGT-03 vd=USER date=2019-07-15 time=18:39:49 logid="0000000013" type="traffic"
subtype="forward" level="notice" eventtime=1563205189 srcip=11.3.3.17 srcport=50544 srcintf="SGI-CORE.123" srcintfrole="undefined"... (3 Replies)
Discussion started by: arm
3 Replies
10. UNIX for Beginners Questions & Answers
Hi,
I want to parse below file and Write a function to extract the logs between two given timestamp.
Apache (Unix) Log Samples - MonitorWare
The challenge here is there are three date and time format.
First :- 07/Mar/2004:16:05:49
Second :- Sun Mar 7 16:02:00 2004
Third :- 29-Mar... (6 Replies)
Discussion started by: sahil_shine
6 Replies
LEARN ABOUT MOJAVE
osacompile
OSACOMPILE(1) BSD General Commands Manual OSACOMPILE(1)
NAME
osacompile -- compile AppleScripts and other OSA language scripts
SYNOPSIS
osacompile [-l language] [-e command] [-o name] [-d] [-r type:id] [-t type] [-c creator] [-x] [-s] [-u] [-a arch] [file ...]
DESCRIPTION
osacompile compiles the given files, or standard input if none are listed, into a single output script. Files may be plain text or other
compiled scripts. The options are as follows:
-l language
Override the language for any plain text files. Normally, plain text files are compiled as AppleScript.
-e command
Enter one line of a script. Script commands given via -e are prepended to the normal source, if any. Multiple -e options may be given
to build up a multi-line script. Because most scripts use characters that are special to many shell programs (e.g., AppleScript uses
single and double quote marks, ``('', ``)'', and ``*''), the command will have to be correctly quoted and escaped to get it past the
shell intact.
-o name
Place the output in the file name. If -o is not specified, the resulting script is placed in the file ``a.scpt''. The value of -o
partly determines the output file format; see below.
-x Save the resulting script as execute-only.
The following options are only relevant when creating a new bundled applet or droplet:
-s Stay-open applet.
-u Use startup screen.
-a arch
Create the applet or droplet for the specified target architecture arch. The allowable values are ``ppc'', ``i386'', and ``x86_64''.
The default is to create a universal binary.
The following options control the packaging of the output file. You should only need them for compatibility with classic Mac OS or for cus-
tom file formats.
-d Place the resulting script in the data fork of the output file. This is the default.
-r type:id
Place the resulting script in the resource fork of the output file, in the specified resource.
-t type
Set the output file type to type, where type is a four-character code. If this option is not specified, the creator code will not be
set.
-c creator
Set the output file creator to creator, where creator is a four-character code. If this option is not specified, the creator code will
not be set.
If no options are specified, osacompile produces a Mac OS X format script file: data fork only, with no type or creator code.
If the -o option is specified and the file does not already exist, osacompile uses the filename extension to determine what type of file to
create. If the filename ends with ``.app'', it creates a bundled applet or droplet. If the filename ends with ``.scptd'', it creates a bun-
dled compiled script. Otherwise, it creates a flat file with the script data placed according to the values of the -d and -r options.
EXAMPLES
To produce a script compatible with classic Mac OS:
osacompile -r scpt:128 -t osas -c ToyS example.applescript
SEE ALSO
osascript(1), osalang(1)
Mac OS X November 12, 2008 Mac OS X