Sponsored Content
Top Forums Shell Programming and Scripting Classify lines in file using perl Post 302995807 by Aia on Wednesday 12th of April 2017 09:19:01 PM
Old 04-12-2017
Code:
if ($ClinSig !~ /something/) {
   # This is not something
}
else {
    # Can ONLY be something
}

Code:
if ($ClinSig !~/untested|unknown|not provided|other|[.|]/i) {
   # Anything that it is not untested or unknown or not provide or other or dot or pipe
}
else {
   # Here can only be untested or unknown or not provided or other or dot or pipe.
   # It will never be Pathogenic or any other term except above. Even if you place it inside an if
}

I suggest you start with what it is

Code:
if( $ClinSig =~ /something/ ) {
    # assignment for something
}
elsif( $ClinSig =~ /somethingElse/ ){
    # assignment for somethingElse
}
elsif($ClinSig =~ /notquiteSomething/ ){
    # assignment for notquiteSomething
}
elsif( $ClinSig =~ /likeSomething/ ) {
   # assignment for likeSomething
}


Last edited by Aia; 04-12-2017 at 11:54 PM..
This User Gave Thanks to Aia For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

strip first 4 and last 2 lines from a file using perl

Hi I have a file from which i need to remove the first 4 and the last 2 lines.. i know how to do it with sed but i need to do it in a perl script.. can you please help me how to do that. Thanks (10 Replies)
Discussion started by: meghana
10 Replies

2. Shell Programming and Scripting

add lines in file with perl

How to search string like: a and replace to a a a : : a in a file with perl? Thanks, Grace (6 Replies)
Discussion started by: jinsh
6 Replies

3. Shell Programming and Scripting

How to remove the lines from file using perl

Can anyone tell me what could be the solution to following : I have one .txt file which contains some seed information. This seed may appear multiple time in the file so what I want do is if this seed appears again in the file then that line should be removed. here is the contents of .txt... (5 Replies)
Discussion started by: dipakg
5 Replies

4. Shell Programming and Scripting

Parsing a file using perl and skipping some lines

Hi, Consider following file with input: `YFLG:NC^Byad_insert constraint {id=600104470} {profile=GENDER == 2} {profile=BEHAVIOR == 17} {profile=SITEATTR_MULT == siteid:211051} {profile=AGE in } yad_insert ad {id=1718286093336959379} {type=R} ^AYFLG:YOO^Byad_insert constraint {id=600104471}... (1 Reply)
Discussion started by: bvids
1 Replies

5. Shell Programming and Scripting

Using Perl to Merge Multiple Lines in a File

I've hunted and hunted but nothing seems to apply to what I need. Any help will be much appreciated! My input file looks like (Unix): marker,allele1,allele2 RS1002244,1,1 RS1002244,1,3 RS1002244,3,3 RS1003719,2,2 RS1003719,2,4 RS1003719,4,4 Most markers are listed 3 times but a few... (2 Replies)
Discussion started by: Peggy White
2 Replies

6. Shell Programming and Scripting

How to use awk to classify file extension from input ls -l

i try to do this for a long time input is command ls -l and output is: Number of files : xx Number of file type – awk : 5 total size: 2345 bytes // file ex type .awk Number of file type – dat : 10 total size: 233 bytes // file ex type .dat ... Number of unknown file type... (1 Reply)
Discussion started by: retsuseiba
1 Replies

7. Shell Programming and Scripting

How to get the lines matched of a file in perl?

Hi, I want to match the time in the file and retrieve those contents of the file. I am taking only first two parameters of localtime(time) function minutes and seconds so partial match i am performing. For Example $start = "14:23"; $end = "14:30"; I am matching file contents... (3 Replies)
Discussion started by: vanitham
3 Replies

8. UNIX for Dummies Questions & Answers

Classify value to a range

Dear All, I need to classify my data into sets or ranges based on values in the second column of a file as - low medium and high. INPUT: file1.dat 1.tmp 1.03 2.tmp 0.38 3.tmp 3.23 4.tmp 1.34 I would like to classify all the numerical values into a range based on the followng... (3 Replies)
Discussion started by: chen.xiao.po
3 Replies

9. Shell Programming and Scripting

How to delete lines from a file in PERL?

Hi, I have 500 MB of file. I want to retain first line and last line of the file. I am unaware of deleting lines from a file in PERL. How can i do it in PERL? Regards VANITHA (3 Replies)
Discussion started by: vanitham
3 Replies

10. Shell Programming and Scripting

AWK to classify a file into several ones ..

Good Day All, I need to make a script that will do the following : 1- read a .csv file line by line, check the 3 field of each file print the whole line if this field matches the condition (note : FS = ",") 2-from the basic file, the script should genrate 3 new files based on the step #1... (6 Replies)
Discussion started by: engkemo2002
6 Replies
Locale::Codes::LangExt(3)				User Contributed Perl Documentation				 Locale::Codes::LangExt(3)

NAME
Locale::Codes::LangExt - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangExt; $lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic' $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langext_codes(); @names = all_langext_names(); DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langext('acm','alpha'); $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic. This is the default code set. ROUTINES
code2langext ( CODE [,CODESET] ) langext2code ( NAME [,CODESET] ) langext_code2code ( CODE ,CODESET ,CODESET2 ) all_langext_codes ( [CODESET] ) all_langext_names ( [CODESET] ) Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] ) Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME ) Locale::Codes::LangExt::delete_langext_alias ( NAME ) Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.3 2013-02-27 Locale::Codes::LangExt(3)
All times are GMT -4. The time now is 02:33 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy