Sponsored Content
Full Discussion: Grep command
Top Forums Shell Programming and Scripting Grep command Post 302994246 by Theo Score on Monday 20th of March 2017 11:56:56 PM
Old 03-21-2017
Grep command

Hi All,

I have a directory of simulation data files with structure dump*.data and an example of such data file is given below.

Code:
ITEM: TIMESTEP
10000
ITEM: NUMBER OF ATOMS
6
ITEM: BOX BOUNDS ff ff ff
-0.15 0.15
0 0.5
-0.15 0.15
ITEM: ATOMS id type x y z vx vy vz fx fy fz omegax omegay omegaz radius c_nconts 
1 1 -0.0506691 0.371195 -0.0540098 0 -1 -0 0 0 0 0 0 0 0.03 0 
4 2 -0.0400495 0.270148 0.0120722 0 -1.25925 0 0 -0.345173 0 0 0 0 0.02 0 
2 1 -0.0102719 0.415304 0.0113916 0 -1 -0 0 0 0 0 0 0 0.01 0 
6 2 0.0192567 0.33773 0.0256545 0 -1 -0 0 0 0 0 0 0 0.01 0 
3 1 0.0371105 0.373507 -0.00483919 0 -1 -0 0 0 0 0 0 0 0.02 0 
5 2 0.0426929 0.366908 0.057645 0 -1 -0 0 0 0 0 0 0 0.03 0

I have made up the script below which filters specific number in the first column and read thorough in all the data files

Code:
grep -h "^$1 " dump[1-9]????.data > particle$1.dat 
grep -h "^$1 " dump[1-9]?????.data >> particle$1.dat
grep -h "^$1 " dump[1-9]??????.data >> particle$1.dat

Now I want the code to read first the second row (10000 in this case) and append it as the first column of the results of the current code. Row 2 in the data files have values of 10000, 20000, 30000,...1790000,1800000. For example, if I read for row which starts with 4, I want the output to be

Code:
10000 4 2 -0.0400495 0.270148 0.0120722 0 -1.25925 0 0 -0.345173 0 0 0 0 0.02 0

Thank you.

Last edited by Theo Score; 03-21-2017 at 01:02 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

grep command

What is the meaning of this grep -v $object grant_BU.sql>temp (1 Reply)
Discussion started by: debasis.mishra
1 Replies

2. UNIX for Dummies Questions & Answers

grep command

hi all i have directory /usr under this directory i have subdirectories tmp1,tmp2,tmp3 like this /usr/tmp1 /usr/tmp2 /usr/tmp3 and so on i want to search string in files (i don't know the name of the files)and i want to serch it in all the directories under the /usr how shell i do... (3 Replies)
Discussion started by: naamas03
3 Replies

3. UNIX for Advanced & Expert Users

how to exclude the GREP command from GREP

I am doing "ps -f" to see my process. but I get lines that one of it represents the ps command itself. I want to grep it out using -v flag, but than I get another process that belongs to the GREP itself : I would like to exclude # ps -f UID PID PPID C STIME TTY TIME CMD... (2 Replies)
Discussion started by: yamsin789
2 Replies

4. Shell Programming and Scripting

can anyone help with shell script command about searching word with grep command?

i want to search in the current directory all the files that contain one word for example "hello" i want to achieve it with the grep command but not with the grep * (2 Replies)
Discussion started by: aintour
2 Replies

5. Shell Programming and Scripting

Help with using grep command with copy command

Hi, im taking an entry Unix class, and as part of my lab assignment I have to copy all files in the /home/david/lab3 directory that have the file extension .save to your lab3/temp directory. I'm having trouble getting the grep to do anything worth while I've been trying to do: cp... (6 Replies)
Discussion started by: Critical jeff
6 Replies

6. Shell Programming and Scripting

Grep Command

Hi, I have around 500 Text files and Each file will be having either String1 or String2. I want to list the file only which has String1 and Sting2 in a single command.. (5 Replies)
Discussion started by: balasubramani04
5 Replies

7. Shell Programming and Scripting

help on grep command...

Hi I have lots of file in on folder and i want to egrep from only few files. List of files...... Polt_KJ_430_OutputRBS_istUt_CR2.log Polt_KN_4122_OutputRBS_ncChk_CR.log Polt_LN_2230_OutputRNC_Hth_CLKLKL.log Solt_KJ_430_OutputRBS_istUt_CR2.log Solt_KN_4122_OutputRBS_ncChk_CR3.log... (2 Replies)
Discussion started by: asavaliya
2 Replies

8. Shell Programming and Scripting

Grep command

grep -i -f panel_genes.txt hg19_refGene.txt > match.txt seems to be pulling names the do not exist in the input file (panel_genes.txt) - the output is attached as well (match.txt) For example, RNF185 or ZNF146 are not genes in the input. I am trying to match the input file genes only and am... (9 Replies)
Discussion started by: cmccabe
9 Replies

9. Shell Programming and Scripting

Grep command giving different result for different users for same command

Hello, I am running below command as root user #nodetool cfstats tests | grep "Memtable switch count" Memtable switch count: 12 Where as when I try to run same command as another user it gives different result. #su -l zabbix -s /bin/bash -c "nodetool cfstats tests | grep "Memtable switch... (10 Replies)
Discussion started by: Pushpraj
10 Replies

10. UNIX for Beginners Questions & Answers

Help on grep command

for example i have a directory home/solaris/unix/samplefiles/ with defaults files in it.. those default files have 1 word in common "UNIX". how can i list the files without "UNIX" words in it using grep command thanks, im using unix solaris, korn shell.. (1 Reply)
Discussion started by: daveaztig14
1 Replies
Array(3pm)						User Contributed Perl Documentation						Array(3pm)

NAME
Test::Data::Array -- test functions for array variables SYNOPSIS
use Test::Data qw(Array); DESCRIPTION
Functions array_any_ok( ITEM, ARRAY [, NAME] ) Ok if any element of ARRAY is ITEM. array_none_ok( ITEM, ARRAY [, NAME] ) Ok if no element of ARRAY is ITEM. array_once_ok( ITEM, ARRAY [, NAME] ) Ok if only one element of ARRAY is ITEM. array_multiple_ok( ITEM, ARRAY [, NAME] ) Ok if more than one element of ARRAY is ITEM. array_max_ok( NUMBER, ARRAY [, NAME] ) Ok if all elements of ARRAY are numerically less than or equal to NUMBER. array_min_ok( NUMBER, ARRAY [, NAME] ) Ok if all elements of ARRAY are numerically greater than or equal to NUMBER. array_maxstr_ok( ITEM, ARRAY [, NAME] ) Ok if all elements of ARRAY are asciibetically less than or equal to MAX. array_minstr_ok( ITEM, ARRAY [, NAME] ) Ok if all elements of ARRAY are asciibetically greater than or equal to MAX. array_sum_ok( SUM, ARRAY [, NAME] ) Ok if the numerical sum of ARRAY is SUM. array_empty_ok( ARRAY [, NAME] ) Ok if the array contains no elements. array_length_ok( ARRAY, LENGTH [, NAME] ) Ok if the array contains LENGTH number of elements. array_sortedstr_ascending_ok( ARRAY, [, NAME] ) Ok if each succeeding element is asciibetically greater than or equal to the one before. array_sortedstr_descending_ok( ARRAY, [, NAME] ) Ok if each succeeding element is asciibetically less than or equal to the one before. array_sorted_ascending_ok( ARRAY, [, NAME] ) Ok if each succeeding element is numerically greater than or equal to the one before. array_sorted_descending_ok( ARRAY, [, NAME] ) Ok if each succeeding element is numerically less than or equal to the one before. SEE ALSO
Test::Data, Test::Data::Scalar, Test::Data::Function, Test::Data::Hash, Test::Builder SOURCE AVAILABILITY
This source is in Github: http://github.com/briandfoy/test-data/tree/master AUTHOR
brian d foy, "<bdfoy@cpan.org>" COPYRIGHT AND LICENSE
Copyright (c) 2002-2009 brian d foy. All rights reserved. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.14.2 2009-02-12 Array(3pm)
All times are GMT -4. The time now is 03:26 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy