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Top Forums Shell Programming and Scripting Scan and remove if file infected using bash Post 302990264 by cmccabe on Tuesday 24th of January 2017 07:53:12 AM
Old 01-24-2017
So if I am following correctly, something more like:

Code:
#!/bin/bash
DIR=/home/cmccabe/Desktop/NGS/API
log=$HOME/virus-scan.log

{
echo "The extensions are"
ls | awk -F'\.' 'NF>1 {ext[$NF]++} END {for (i in ext) print ext[i],i}'
} > $log

scanned=0
for FILE in "$DIR"/*
do
     # check file length is nonzero otherwise commands may be repeated
     if [ -s "$FILE" ]; then
          {
          date
          clamscan -r "$FILE"
          } >> $log
          ((scanned++))
          while read line
          do
              line="${line% FOUND}"
              virus_name="${line#* }"
              file_name="${line%: *}"
              ((virus_count=$virus_count+1))

              printf "  %s\n" "${file_name}"            # Output to screen
              printf "%s\n" "${file_name}" >&3          # Output to log
          done < <(grep " FOUND$" $scan_log) 3>log
          echo "The files infected have been moved to the folder at /home/cmccabe/quarantine"
        fi
     fi
done
[ $scanned -eq 0 ] && echo "nothing detected by scan" >> $log

Thank you for your help Smilie.

Last edited by rbatte1; 01-24-2017 at 09:50 AM.. Reason: Adjusted indenting for clarity
 

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RBASH(1)						      General Commands Manual							  RBASH(1)

NAME
rbash - restricted bash, see bash(1) RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow- ing are disallowed or not performed: o changing directories with cd o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV o specifying command names containing / o specifying a file name containing a / as an argument to the . builtin command o specifying a filename containing a slash as an argument to the -p option to the hash builtin command o importing function definitions from the shell environment at startup o parsing the value of SHELLOPTS from the shell environment at startup o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators o using the exec builtin command to replace the shell with another command o adding or deleting builtin commands with the -f and -d options to the enable builtin command o using the enable builtin command to enable disabled shell builtins o specifying the -p option to the command builtin command o turning off restricted mode with set +r or set +o restricted. These restrictions are enforced after any startup files are read. When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script. SEE ALSO
bash(1) GNU Bash-4.0 2004 Apr 20 RBASH(1)
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