The above command works great except when I use my actual datasets, the output is blank. They are the exact same file formats
NA12878_GIAB_highconf is file2 in the example
~80MB
IDP.txt is file1 in the example
~3MB
I was able to decrease the size but they are still too large to attach. Thank you .
Last edited by cmccabe; 12-21-2016 at 03:16 PM..
Reason: fixed format
Hi, i've two files (file1, file2) i want to take value (in column1) and search in file2 if the they match print the value from file2.
this is what i have so far.
awk 'FILENAME=="file1"{ arr=$1 }
FILENAME=="file2"
{print $0}
' file1 file2 (2 Replies)
Hi All,
as you can see I'm pretty new to this board. :D
I'm struggling around with small script to search a few fields in another file.
Basically I have file1 looking like this:
15:38:28 sz:10001 pr:14.16
15:38:28 sz:10002 pr:18.41
15:38:29 sz:10003 pr:19.28
15:38:30 sz:10004... (1 Reply)
hi,
I have two xml files with the name source.xml and tobe_replaced.xml.
Sample data:
source.xml contains:
<?xml version="1.0"?>
<product description="prod1" product_info="some/info">
<product description="prod2" product_info="xyz/allinfo">
<product description="abc/partialinfo"... (2 Replies)
First, thanks for the help in previous posts... couldn't have gotten where I am now without it!
So here is what I have, I use AWK to match $1 and $2 as 1 string in file1 to $1 and $2 as 1 string in file2. Now I'm wondering if I can extend this AWK command to incorporate the following:
If $1... (4 Replies)
I have very limited coding skills but I'm wondering if someone could help me with this. There are many threads about matching strings in two files, but I have no idea how to add a column from one file to another based on a matching string.
I'm looking to match column1 in file1 to the number... (3 Replies)
Hi Freinds,
i have a file1 as below
file1
1|ndmf|fdd|d3484|34874
2|jdehf|wru7|478|w489
3|dfkj|wej|484|49894
file2 contains lakhs of records and not in sorted order
i want to retrive only the records from file2 by searcing the first field of file 1
i used
grep ^1 file2... (4 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Trying to use awk to:
update $2 in file2 with the $2 value in file1, if $1 in file1 matches $13 in file2, which is tab-delimeted. The $2values may already be the same so in that case nothing happens and the next line is processed.
There are exactly 4,605 unique $13 values. Thank you :).
... (4 Replies)
In the awk below I am trying to set/update the value of $14 in file2 in
bold, using the matching NM_ in $12 or $9 in file2
with the NM_ in $2 of file1.
The lengths of $9 and $12 can be variable but what is consistent is the start pattern
will always be NM_ and the end pattern is always ;... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT ULTRIX
diff3
diff3(1) General Commands Manual diff3(1)Name
diff3 - 3-way differential file comparison
Syntax
diff3 [-ex3] file1 file2 file3
Description
The command compares three versions of a file, and publishes the ranges of text that disagree, flagged with the following codes:
==== all three files differ
====1 file1 is different
====2 file2 is different
====3 file3 is different
The type of change needed to convert a given range of a given file to some other is indicated in one of these ways:
f : n1 a Text is to be appended after line number n1 in file f, where f = 1, 2, or 3.
f : n1 , n2 c
Text is to be changed in the range line n1 to line n2. If n1 = n2, the range may be abbreviated to n1.
The original contents of the range follows immediately after a c indication. When the contents of two files are identical, the contents of
the lower-numbered file is suppressed.
Options-3 Produces an editor script containing the changes between file1 and file2 that are to be incorporated into file3.
-e Produces an editor script containing the changes between file2 and file3 that are to be incorporated into file1.
-x Produces an editor script containing the changes among all three files.
Examples
Under the -e option, publishes a script for the editor that incorporates into file1 all changes between file2 and file3 - that is, the
changes that would normally be flagged ==== and ====3. Option -x (-3) produces a script to incorporate only changes flagged ==== (====3).
The following command applies the resulting script to `file1':
(cat script; echo '1,$p') | ed - file1
Restrictions
Text lines that consist of a single `.' defeat -e.
Files
/tmp/d3?????
/usr/lib/diff3
See Alsocmp(1), comm(1), diff(1), dffmk(1), join(1), sccsdiff(1), uniq(1)diff3(1)