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Top Forums Shell Programming and Scripting Bash to add folder to exsisting folders in directory Post 302982775 by Don Cragun on Monday 3rd of October 2016 10:46:38 PM
Old 10-03-2016
It seems that you would want to replace the bold code by one or more:
Code:
        mkdir -p "$D/possibly_missing_directory" ...

commands. Given differences in case, differences in leading hyphens and/or spaces, and confusing uses of commas (sometimes separating lists of directories to be created and sometimes apparently being part of the name of a directory being created [<space>annovar,<space>stats]), I am not going to try to guess at which actual mkdir commands you need to do what you really want to do.
 

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MKDIR(1)						    BSD General Commands Manual 						  MKDIR(1)

NAME
mkdir -- make directories SYNOPSIS
mkdir [-pv] [-m mode] directory_name ... DESCRIPTION
The mkdir utility creates the directories named as operands, in the order specified, using mode rwxrwxrwx (0777) as modified by the current umask(2). The options are as follows: -m mode Set the file permission bits of the final created directory to the specified mode. The mode argument can be in any of the formats specified to the chmod(1) command. If a symbolic mode is specified, the operation characters ``+'' and ``-'' are interpreted rela- tive to an initial mode of ``a=rwx''. -p Create intermediate directories as required. If this option is not specified, the full path prefix of each operand must already exist. On the other hand, with this option specified, no error will be reported if a directory given as an operand already exists. Intermediate directories are created with permission bits of rwxrwxrwx (0777) as modified by the current umask, plus write and search permission for the owner. -v Be verbose when creating directories, listing them as they are created. The user must have write permission in the parent directory. DIAGNOSTICS
The mkdir utility exits 0 on success, and >0 if an error occurs. SEE ALSO
rmdir(1) COMPATIBILITY
The -v option is non-standard and its use in scripts is not recommended. STANDARDS
The mkdir utility is expected to be IEEE Std 1003.2 (``POSIX.2'') compatible. HISTORY
A mkdir command appeared in Version 1 AT&T UNIX. BSD
January 25, 1994 BSD
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