while read file1 file2
awk -F'\t' -v OFS='\t' 'FNR==1 { next }
FNR == NR { file1[$2,$4,$5] = $2 FS $4 FS $5 }
FNR != NR { file2[$2,$4,$5] = $2 FS $4 FS $5 }
END { print "Match:"; for (k in file1) if (k in file2) print file1[k] # Or file2[k]
print "Missing in Reference but found in IDP:"; for (k in file2) if (!(k in file1)) print file2[k]
print "Missing in IDP but found in Reference:"; for (k in file1) if (!(k in file2)) print file1[k]
}'/home/cmccabe/Desktop/comparison/reference/10bp/$file1 /home/cmccabe/Desktop/comparison/validation/files/$file2 > /home/cmccabe/Desktop/comparison/ref_val/concordance.txt
done < "/home/cmccabe/Desktop/comparison/ref_val/out"
HI
I am trying to store the output of this awk command
awk -F, {(if NR==2) print $1} test.sr
in a variable when I am trying v= awk -F, {(if NR==2) print $1} test.sr
$v = awk -F, {(if NR==2) print $1} test.sr
but its not working out .
Any suggestions
Thanks
Arif (3 Replies)
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some_file2.txt.
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$var1
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Discussion started by: am24
12 Replies
LEARN ABOUT ULTRIX
diff3
diff3(1) General Commands Manual diff3(1)Name
diff3 - 3-way differential file comparison
Syntax
diff3 [-ex3] file1 file2 file3
Description
The command compares three versions of a file, and publishes the ranges of text that disagree, flagged with the following codes:
==== all three files differ
====1 file1 is different
====2 file2 is different
====3 file3 is different
The type of change needed to convert a given range of a given file to some other is indicated in one of these ways:
f : n1 a Text is to be appended after line number n1 in file f, where f = 1, 2, or 3.
f : n1 , n2 c
Text is to be changed in the range line n1 to line n2. If n1 = n2, the range may be abbreviated to n1.
The original contents of the range follows immediately after a c indication. When the contents of two files are identical, the contents of
the lower-numbered file is suppressed.
Options-3 Produces an editor script containing the changes between file1 and file2 that are to be incorporated into file3.
-e Produces an editor script containing the changes between file2 and file3 that are to be incorporated into file1.
-x Produces an editor script containing the changes among all three files.
Examples
Under the -e option, publishes a script for the editor that incorporates into file1 all changes between file2 and file3 - that is, the
changes that would normally be flagged ==== and ====3. Option -x (-3) produces a script to incorporate only changes flagged ==== (====3).
The following command applies the resulting script to `file1':
(cat script; echo '1,$p') | ed - file1
Restrictions
Text lines that consist of a single `.' defeat -e.
Files
/tmp/d3?????
/usr/lib/diff3
See Alsocmp(1), comm(1), diff(1), dffmk(1), join(1), sccsdiff(1), uniq(1)diff3(1)
09-30-2016
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