Above code is not doing what you explained in your post.
You need to read line by line in out.txt file then find / list the files with *.bam extension , copy etc.
It may be done in oneliner , if you can add more description about structure of Folder1,Folder2 and /home/cmccabe/nfs/exportedReports with clear example.
if not, try like this:
Sample code written here to update your script.
Last edited by greet_sed; 09-16-2016 at 01:56 PM..
Reason: Add sample code
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT CENTOS
bashbug-64
BASHBUG(1) General Commands Manual BASHBUG(1)NAME
bashbug - report a bug in bash
SYNOPSIS
bashbug [--version] [--help] [email-address]
DESCRIPTION
bashbug is a shell script to help the user compose and mail bug reports concerning bash in a standard format. bashbug invokes the editor
specified by the environment variable EDITOR on a temporary copy of the bug report format outline. The user must fill in the appropriate
fields and exit the editor. bashbug then mails the completed report to bug-bash@gnu.org, or email-address. If the report cannot be
mailed, it is saved in the file dead.bashbug in the invoking user's home directory.
The bug report format outline consists of several sections. The first section provides information about the machine, operating system,
the bash version, and the compilation environment. The second section should be filled in with a description of the bug. The third sec-
tion should be a description of how to reproduce the bug. The optional fourth section is for a proposed fix. Fixes are encouraged.
ENVIRONMENT
bashbug will utilize the following environment variables if they exist:
EDITOR Specifies the preferred editor. If EDITOR is not set, bashbug defaults to emacs.
HOME Directory in which the failed bug report is saved if the mail fails.
TMPDIR Directory in which to create temporary files and directories.
SEE ALSO bash(1)AUTHORS
Brian Fox, Free Software Foundation
bfox@gnu.org
Chet Ramey, Case Western Reserve University
chet@po.cwru.edu
GNU Bash-4.0 1998 July 30 BASHBUG(1)