I need a script (perl or awk..anything is fine) to join 3 files based on three key columns. The no of non-key columns can vary in each file. The columns are delimited by semicolon.
For example,
File1
Dim1;Dim2;Dim3;Fact1;Fact2;Fact3;Fact4;Fact5
---- data delimited by semicolon ---
... (1 Reply)
Hi ,
I have a file which has multiple rows of data, i want to match the pattern for two columns and if both conditions satisfied i have to add the counter by 1 and finally print the count value. How to proceed...
I tried in this way...
awk -F, 'BEGIN {cnt = 0} {if $6 == "VLY278" &&... (6 Replies)
Hi..
i have two files::
file_1::
mOnkey
huMAnfile_2::
Human:hates:banana
i:like:***
Monkey:loves:banana
dogs:kill:catsdesired output::
Monkey:loves:banana
Human:hates:bananaso only when the 1st field matches from both files print it from file_2 ((case-sensitive))
i also would like... (21 Replies)
Hi,
I have an issue to combine multiple lines of a file. I have records as below.
Fields are delimited by TAB. Each lines are ending with a new line char (\n)
Input
--------
ABC 123456 abcde 987
890456 7890 xyz
ght gtuv
ABC 5tyin 1234 789
ghty kuio
ABC ghty jind 1234
678 ght
... (8 Replies)
Hi,
I have a pipe delimeted text file where lines have been split over 2 lines and I need to join them back together. For example the file I have is similar to the following:
aaa|bbb
|ccc
ddd|eee
fff|ggg
|hhh
I ideally need to have it looking like the following
aaa|bbb|ccc
ddd|eee... (5 Replies)
Hi all,
I am new to using awk and am quickly discovering what a powerful pattern-recognition tool it is. However, I have what seems like a fairly basic task that I just can't figure out how to perform in one line. I want awk to find and print all the lines in which one of multiple patterns (e.g.... (8 Replies)
Hello:
I am working parsing a large input file which will be broken down into multiples based on the second field in the file, in this case: STORE.
The idea is to create each file with the corresponding store number, for example: Report_$STORENUM_$DATETIMESTAMP , and obtaining the... (7 Replies)
I am trying to remove all the lines and spaces where the count in $4 or $5 is greater than 1 (more than 1 letter). The file and the output are tab-delimited. Thank you :).
file
X 5811530 . G C NLGN4X
17 10544696 . GA G MYH3
9 96439004 . C ... (1 Reply)
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
The below awk executes as is and produces the current output. It isvery close but what Ican not seem to do is add the -exon..., the ... portion comes from $1 and the _exon is static and will never change. If there is + sign in $4 then the ... is in acending order or sequential. If there is a - in... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT BSD
join
JOIN(1) General Commands Manual JOIN(1)NAME
join - relational database operator
SYNOPSIS
join [ options ] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard
input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis-
carded.
These options are recognized:
-an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-e s Replace empty output fields by string s.
-jn m Join on the mth field of file n. If n is missing, use the mth field in each file.
-o list
Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a
field number.
-tc Use character c as a separator (tab character). Every appearance of c in a line is significant.
SEE ALSO sort(1), comm(1), awk(1)BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort.
The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous.
7th Edition April 29, 1985 JOIN(1)