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Top Forums UNIX for Beginners Questions & Answers sed awk: split a large file to unique file names Post 302980139 by Akshay Hegde on Wednesday 24th of August 2016 12:09:05 PM
Old 08-24-2016
If input file is not sorted then try this
Code:
[akshay@localhost tmp]$ awk '!($1 in a){a[$1]="file"++c".txt"}{print $0 >>a[$1]; close(a[$1])}' file

If input file is sorted then try this
Code:
[akshay@localhost tmp]$ awk '$1 != prev{if(f)close(f);f="file"++c".txt"; prev=$1}{print > f}END{if(f)close(f)}' file


Quote:
Originally Posted by kapr0001
Dear Users,


Appreciate your help if you could help me with splitting a large file > 1 million lines with sed or awk. below is the text in the file
input file.txt
scaffold1 928 929 C/T +
scaffold1 942 943 G/C +
scaffold1 959 960 C/T +
scaffold1 994 995 G/A +
scaffold2 1024 1025 G/A +
scaffold2 1065 1066 G/A +
scaffold2 1356 1357 C/T +
scaffold2 1363 1364 G/A +
scaffold3 1367 1368 G/A +
scaffold3 1403 1404 G/A +
scaffold3 1404 1405 C/T +
scaffold3 1433 1434 G/A +
scaffold3 1467 1468 G/A +
scaffold4 1521 1522 G/A +
scaffold4 63885 63886 T/G +
scaffold4 63907 63908 G/A +
scaffold4 63942 63943 T/C +
scaffold4 63964 63965 G/A +
scaffold5 63996 63997 G/A +
scaffold5 63997 63998 T/C +
scaffold5 64074 64075 G/T +
scaffold100 64076 64077 C/T +
scaffold100 64127 64128 C/T +
scaffold120 64221 64222 A/G +
scaffold1100 64222 64223 T/C +
scaffold1890 64263 64264 C/T +
scaffold2000 64281 64282 G/C +
scaffold2001 64292 64293 C/T +
scaffold2002 64343 64344 G/A +
scaffold2003 64347 64348 G/T +

my output file should be unique to the first column name
output files
file1.txt
scaffold1 928 929 C/T +
scaffold1 942 943 G/C +
scaffold1 959 960 C/T +
scaffold1 994 995 G/A +
file2.txt
scaffold2 1024 1025 G/A +
scaffold2 1065 1066 G/A +
scaffold2 1356 1357 C/T +
scaffold2 1363 1364 G/A +
file2.txt
scaffold3 1367 1368 G/A +
scaffold3 1403 1404 G/A +
scaffold3 1404 1405 C/T +
scaffold3 1433 1434 G/A +
scaffold3 1467 1468 G/A +

and so on.

Thank you,
kapr0001
 

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PYP(1)							      General Commands Manual							    PYP(1)

NAME
pyp - The Pyed Piper: A Modern Python Alternative to awk, sed and Other Unix Text Manipulation Utilities SYNOPSIS
pyp [options] files ... DESCRIPTION
pyp, the Pyed Piper, is a command line tool for text manipulation. It is similar to awk and sed in functionality, but its subcommands are Python based, and thus more familiar to many programmers. It can operate both on a per-line base and on the complete input stream. Different features can be pipelined in a single command by using the pipe character familiar from shell commands. pyp backs up its input for reruns with modified commands, and can save commands as macros. On the downside, the rerun feature makes it unsuitable for continuous pipe operation. OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is included below. For a complete description, use --manual. -h, --help Show this help message and exit. -m, --manual Prints out extended help. -l, --macro_list Lists all available macros. -s MACRO_SAVE_NAME, --macro_save=MACRO_SAVE_NAME Saves current command as macro. use "#" for adding comments EXAMPLE: pyp -s "great_macro # prints first letter" "p[1]". -f MACRO_FIND_NAME, --macro_find=MACRO_FIND_NAME Searches for macros with keyword or user name. -d MACRO_DELETE_NAME, --macro_delete=MACRO_DELETE_NAME Deletes specified public macro. -g, --macro_group Specify group macros for save and delete; default is user. -t TEXT_FILE, --text_file=TEXT_FILE Specify text file to load. For advanced users, you should typically cat a file into pyp. -x, --execute Execute all commands. -c, --turn_off_color Prints raw, uncolored output. -u, --unmodified_config Prints out generic PypCustom.py config file. -b BLANK_INPUTS, --blank_inputs=BLANK_INPUTS Generate this number of blank input lines; useful for generating numbered lists with variable 'n'. -n, --no_input Use with command that generates output with no input; same as --dummy_input 1. -k, --keep_false Print blank lines for lines that test as False. default is to filter out False lines from the output. -r, --rerun Rerun based on automatically cached data from the last run. Use this after executing "pyp", pasting input into the shell, and hitting CTRL-D. SEE ALSO
awk(1), grep(1), sed(1). AUTHOR
pyp was written by Toby Rosen <tobyrosen@gmail.com>. This manual page was written by Khalid El Fathi <khalid@elfathi.fr>, for the Debian project (and may be used by others). March 19, 2012 PYP(1)
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