Login or Register to Ask a Question and Join Our Community

Sponsored Content
Full Discussion: Help with merge data with a reference sequence
Top Forums Shell Programming and Scripting Help with merge data with a reference sequence Post 302978487 by cpp_beginner on Sunday 31st of July 2016 06:01:56 AM
Old 07-31-2016
Hi Scrutinizer,

I try with your awk code. It seems to return "Syntax error" Smilie
Code:
awk:  NR==FNR { R[$1,$2]=$3 next } FNR>1 { s=x for(i=1; i<=length($2); i++) s=s (($1,i) in R ? R[$1,i] : substr($2,i,1)) print RS $1 FS s }
awk:                        ^ syntax error
awk:  NR==FNR { R[$1,$2]=$3 next } FNR>1 { s=x for(i=1; i<=length($2); i++) s=s (($1,i) in R ? R[$1,i] : substr($2,i,1)) print RS $1 FS s }
awk:                                           ^ syntax error
awk:  NR==FNR { R[$1,$2]=$3 next } FNR>1 { s=x for(i=1; i<=length($2); i++) s=s (($1,i) in R ? R[$1,i] : substr($2,i,1)) print RS $1 FS s }
awk:                                                                                                                     ^ syntax error

I just type the below command at my terminal:
Code:
awk ' NR==FNR { R[$1,$2]=$3 next } FNR>1 { s=x for(i=1; i<=length($2); i++) s=s (($1,i) in R ? R[$1,i] : substr($2,i,1)) print RS $1 FS s } ' file2 RS=\> FS='\n' file1

I type it as a long awk command Smilie
My Operation System is "x86_64 x86_64 x86_64 GNU/Linux". My awk is "GNU Awk 3.1.7".

Would it be the main problem cause it return syntax error?
Thanks a lot and again for your advice.

---------- Post updated at 05:01 AM ---------- Previous update was at 05:00 AM ----------

Hi,

I believe so Smilie
Do you have any advice regarding my concern?

Sorry.
Still quite new about awk,perl, etc shell script and programming Smilie
 

9 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to extract data from BNC xml with reference brackets?

I have data like the following pattern: <change date="2000-01-09" who="#OUCS">Updated all catrefs</change> <change date="2000-01-08" who="#OUCS">Manually updated tagcounts, titlestmt, and title in source</change> <change date="1999-09-13" who="#UCREL">POS codes revised for BNC-2; header... (14 Replies)
Discussion started by: Johnivy
14 Replies

2. Shell Programming and Scripting

perl merge two files by the time sequence

Hi Guys, i have two files: fileA: 20090611 00:00:11 20090611 00:00:11 20090611 00:00:24 20090611 00:01:10 20090611 07:13:00 fileB: 20090611 00:00:01 20090611 00:00:12 20090611 00:00:24 20090611 00:01:12 20090611 09:13:00 want to make two files into a single file, but follow the... (14 Replies)
Discussion started by: jimmy_y
14 Replies

3. Shell Programming and Scripting

Reference data check for delete

Dear All, I have a master file - Master.txt 100|ABC 200|CED 500|XYZ 800|POL I have a reference file - Ref.txt 200 800 What is desired.. Check for all those records in reference file matching with those within master file and then delete those records from Master file So, at end,... (1 Reply)
Discussion started by: sureshg_sampat
1 Replies

4. Shell Programming and Scripting

Help with checking reference data frequency count

reference data GHTAS QER CC N input data NNWQERPROEGHTASTTTGHTASNCC Desired output GHTAS 2 QER 1 CC 1 N 3 (2 Replies)
Discussion started by: perl_beginner
2 Replies

5. Shell Programming and Scripting

Retrieving sequence data from other file

Hello experts :cool:, I am new to programming and will need your help.. I have 2 very large files with the following format: FILE1: >MLP1019 PL4 >MLP7456 PL3 >MLP9268 PL9 >MLP6245 PL1 FILE2: >MLP1019 STNAPLQTSNTWVSYQPSMMMSLQ >MLP7456 PPYWYWNSAVMIFYVQPLSLLAVLLA >MLP9268... (2 Replies)
Discussion started by: narachaid
2 Replies

6. Shell Programming and Scripting

Merge 2 files with one reference columns

Hi All Source1 servername1,patchid1 servername1,patchid2 servername1,patchid3 servername2,patchid1 servername2,patchid2 servername3,patchid4 servername3,patchid5 Source2 servername1,appname1 servername1,appname2 servername1,appname3 servername2,appname1 servername2,appname2... (13 Replies)
Discussion started by: mv_mv
13 Replies

7. Shell Programming and Scripting

Replace a value using a reference data from other file

Gents, Can you please help me to solve this case In my input file I have a values in column 49 which always need to be one, but sometimes the system create a value 2, in this case I need to go to search in the original file and replace the values in the row where the value 2 is and in the... (6 Replies)
Discussion started by: jiam912
6 Replies

8. Shell Programming and Scripting

Compare data with reference from other file

Gents, Please can you help with this. I have a big file (file2) which contends many records increment every 25 rows ( column 1 ). Then I have other file as reference (file1).. column 1 to 11. I want to compare that all values in file2 (column 2 to 12.) match with values in... (2 Replies)
Discussion started by: jiam912
2 Replies

9. Shell Programming and Scripting

Extract data using a reference

Gents, If there the possibility can to extract data using a reference from other file. input.txt ( big file which contends all data output.txt ( data extracted ) selection.txt ( information to extract the data Example In file input.txt there is big data each record have 56 lines like... (3 Replies)
Discussion started by: jiam912
3 Replies

LEARN ABOUT PHP

db2_field_num

DB2_FIELD_NUM(3)							 1							  DB2_FIELD_NUM(3)

db2_field_num - Returns the position of the named column in a result set

SYNOPSIS

       int db2_field_num (resource  $stmt, mixed  $column)

DESCRIPTION

	Returns the position of the named column in a result set.

PARAMETERS

	      o $stmt
		- Specifies a statement resource containing a result set.

	      o $column
		-  Specifies  the  column in the result set. This can either be an integer representing the 0-indexed position of the column, or a
		string containing the name of the column.

RETURN VALUES

	Returns an integer containing the 0-indexed position of the named column in the result set. If the specified column does not exist in  the
       result set, db2_field_num(3) returns FALSE.

SEE ALSO

       db2_field_display_size(3), db2_field_name(3), db2_field_precision(3), db2_field_scale(3), db2_field_type(3), db2_field_width(3).

PHP Documentation Group 													  DB2_FIELD_NUM(3)
All times are GMT -4. The time now is 02:00 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy