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Top Forums Shell Programming and Scripting Use same file selected in first bash process that has matching digits in it fot the second Post 302977923 by pilnet101 on Saturday 23rd of July 2016 02:15:59 PM
Old 07-23-2016
Hi - This is only rough but something like the below should work on your data:

Code:
#!/bin/bash
FILESDIR=/home/cmccabe/Desktop/files
ANNOVARDIR=/home/cmccabe/Desktop/annovar

PS3="please select a file to analyze with a panel: "
select file in ${FILESDIR}/*; do
        [[ -z ${file} ]] && printf "Pick a file" || break
done

filename=${file##*/}
file2=$(ls ${ANNOVARDIR}/${filename%%_*}*)
printf "File 1 is: ${file}\n"
printf "File 2 is: ${file2}\n"

This makes the assumption that:
  • There is only 1 file in the 'annovar' directory which has the same prefix (delimited by an underscore) as the associated file in the 'files' directory and it exists
  • This is not just applicable for '123_' but for all files
This User Gave Thanks to pilnet101 For This Post:
 

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LIBBASH(7)							  libbash Manual							LIBBASH(7)

NAME
libbash -- A bash shared libraries package. DESCRIPTION
libbash is a package that enables bash dynamic-like shared libraries. Actually its a tool for managing bash scripts whose functions you may want to load and use in scripts of your own. It contains a 'dynamic loader' for the shared libraries ( ldbash(1)), a configuration tool (ldbashconfig(8)), and some libraries. Using ldbash(1) you are able to load loadable bash libraries, such as getopts(1) and hashstash(1). A bash shared library that can be loaded using ldbash(1) must answer 4 requirments: 1. It must be installed in $LIBBASH_PREFIX/lib/bash (default is /usr/lib/bash). 2. It must contain a line that begins with '#EXPORT='. That line will contain (after the '=') a list of functions that the library exports. I.e. all the function that will be usable after loading that library will be listed in that line. 3. It must contain a line that begins with '#REQUIRE='. That line will contain (after the '=') a list of bash libraries that are required for our library. I.e. every bash library that is in use in our bash library must be listed there. 4. The library must be listed (For more information, see ldbashconfig(8)). Basic guidelines for writing library of your own: 1. Be aware, that your library will be actually sourced. So, basically, it should contain (i.e define) only functions. 2. Try to declare all variables intended for internal use as local. 3. Global variables and functions that are intended for internal use (i.e are not defined in '#EXPORT=') should begin with: __<library_name>_ For example, internal function myfoosort of hashstash library should be named as __hashstash_myfoosort This helps to avoid conflicts in global name space when using libraries that come from different vendors. 4. See html manual for full version of this guide. AUTHORS
Hai Zaar <haizaar@haizaar.com> Gil Ran <ril@ran4.net> SEE ALSO
ldbash(1), ldbashconfig(8), getopts(1), hashstash(1) colors(1) messages(1) urlcoding(1) locks(1) Linux Epoch Linux
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