I have a script that shows me the disk SPace used by different dir under my home dir:
#!/bin/ksh
cd /ednpdtu3/u01/pipe
p1=`df -g | tail -1 | tr -s " " | cut -d " " -f2`
echo "Total Disk Space of Home Dir is $p1 GB"
p2=`df -g | tail -1 | tr -s " " | cut -d " " -f3`
echo "Total Disk Space... (2 Replies)
Hello all,
I am working on a basic script but need a little help.
Issue:
I am running a SQL Query using sqlplus and a shell script. I have the output of the statement stored as variable $A. $A is set to "other text here 45678754 other text here". I need to strip all text except that numeric... (13 Replies)
Can someone tell me how to change the first column in a very large 17k line file from a random 10 digit numeric value to a non numeric value. The format of lines in the file is:
1702938475,SNU022,201004
the first 10 numbers always begin with 170 (6 Replies)
HI,
can any one help me please ..
i have flat file like
qwer123rt ass3242ccf jjk654
kjh838ppp nhdg453ok hdkk34
i want remove numeric characters in the flat file
i want output like this
qwerrt assccf jjk
kjhppp nhdgok hdkk
help me... (4 Replies)
I have file1.txt
LBP298W2,300,-18,-115,-12,-105
LBP298W2,300,-18,-115,LBP298W3,300
LBP298W3,300,-18,-115,-12,-105---------- Post updated at 03:35 AM ---------- Previous update was at 03:34 AM ----------
i want to remove every line with non numeric value in column 5
expected result
... (4 Replies)
I created a awk state to calculate the number of success however when the query runs it has a leading zero. Any ideas on how to remove the leading zero from the calculation?
Here is my query:
cat myfile.log | grep | awk '{print $2,$3,$7,$11,$15,$19,$23,$27,$31,$35($19/$15*100)}'
02:00:00... (1 Reply)
Hi,
i have a file with multiple entries. After some tests with sed i managed to get the file output as follows:
lsn=X-LINK-IN0,apc=661:0,state=avail,avail/links=1/1,
00,2110597,2094790,0,81,529,75649011,56435363,
lsn=TM1ITP1-AM1ITP1-LS,apc=500:0,state=avail,avail/links=1/1,... (5 Replies)
Discussion started by: nms
5 Replies
LEARN ABOUT DEBIAN
theseus_align
THESEUS_ALIGN(1) General Commands Manual THESEUS_ALIGN(1)NAME
theseus_align - quick-and-dirty way to superimpose proteins
SYNOPSIS
theseus_align [theseus options] -f pdbfile1.pdb pdbfile2.pdb ...
OPTIONS
The options given to the script will be passed on to theseus. For a complete description, see the man page for theseus (1).
DESCRIPTION
This manual page briefly documents briefly the script theseus_align, designed for a quick-and-dirty way to ML superposition proteins with
different sequences. It should work very well when the protein sequences are relatively similar, although the ML method will still give
much better results than least-squares when the sequences are moderately divergent. Technically, this procedure gives a structure-based
superposition of a sequence-based alignment. It does not perform a structure-based alignment.
First, the script uses theseus to create FASTA formatted sequence files corresponding to the exact protein sequences found in the pdb files
that you supply.
Second, these sequences are aligned using the multiple sequence alignment program of your choice. The script can easily be modified for
CLUSTALW, T_COFFEE, KALIGN, DIALIGN2, or MAFFT. Any multiple sequence alignment program can be used, as long as it can generate clustal-
formatted files. However, I highly recommend Bob Edgar's MUSCLE program for both its speed and accuracy. (For more info see
http://www.drive5.com/muscle/ .)
Third, theseus performs a superposition of the structures using the sequence alignment as a guide.
The installed version of theseus_align uses muscle (1) for doing the multiple sequence alignment. If you wish to use one of the other pro-
grams mentioned above, you'll have to copy the script to your own directory and edit it.
SEE ALSO
theseus (1), muscle (1), clustalw (1), t_coffee (1), kalign (1), dialign2 (1), mafft (1). All of these programs can be installed on Debian
or Ubuntu systems using apt-get (8).
AUTHOR
theseus_align was written by Douglas L. Theobald, Department of Biochemistry, Brandeis University.
November, 2008 THESEUS_ALIGN(1)