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Top Forums UNIX for Dummies Questions & Answers Loop with Perl (string search) Post 302969452 by Scrutinizer on Tuesday 22nd of March 2016 11:34:05 PM
Old 03-23-2016
Quote:
Originally Posted by rdrtx1
try:
Code:
#!/bin/bash
Primers=( NULL 'JOHN' )
for y in {1..1}
do
        perl -ple '/'${Primers[$y]}'/ and y/ACGT/TGCA/ and $_ = reverse unless /^>/' test.txt
done

Note that by doing this anything that is in ${Primers[$y]} will be unprotected by quotes from the shell and will be subject to field splitting an globbing..

To illustrate (in an empty directory):
Code:
$ touch foo bar
$ var="a   b*"
$ echo "$var"
a   b*
$ echo ''$var''
a bar


Last edited by Scrutinizer; 03-23-2016 at 12:42 AM..
 

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IO::Async::Loop::Glib(3pm)				User Contributed Perl Documentation				IO::Async::Loop::Glib(3pm)

NAME
"IO::Async::Loop::Glib" - use "IO::Async" with Glib or GTK SYNOPSIS
use IO::Async::Loop::Glib; my $loop = IO::Async::Loop::Glib->new(); $loop->add( ... ); ... # Rest of GLib/Gtk program that uses GLib Glib::MainLoop->new->run(); Or $loop->loop_forever(); Or while(1) { $loop->loop_once(); } DESCRIPTION
This subclass of "IO::Async::Loop" uses the "Glib::MainLoop" to perform read-ready and write-ready tests. The appropriate "Glib::IO" sources are added or removed from the "Glib::MainLoop" when notifiers are added or removed from the set, or when they change their "want_writeready" status. The callbacks are called automatically by Glib itself; no special methods on this loop object are required. CONSTRUCTOR
$loop = IO::Async::Loop::Glib->new() This function returns a new instance of a "IO::Async::Loop::Glib" object. It takes no special arguments. METHODS
There are no special methods in this subclass, other than those provided by the "IO::Async::Loop" base class. $count = $loop->loop_once( $timeout ) This method calls the "iteration()" method on the underlying "Glib::MainContext". If a timeout value is supplied, then a Glib timeout will be installed, to interrupt the loop at that time. If Glib indicates that any callbacks were fired, then this method will return 1 (however, it does not mean that any "IO::Async" callbacks were invoked, as there may be other parts of code sharing the Glib main context. Otherwise, it will return 0. SEE ALSO
o Glib - Perl wrappers for the GLib utility and Object libraries o Gtk2 - Perl interface to the 2.x series of the Gimp Toolkit library AUTHOR
Paul Evans <leonerd@leonerd.org.uk> perl v5.14.2 2013-03-01 IO::Async::Loop::Glib(3pm)
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