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Top Forums UNIX for Dummies Questions & Answers Loop with Perl (string search) Post 302969452 by Scrutinizer on Tuesday 22nd of March 2016 11:34:05 PM
Old 03-23-2016
Quote:
Originally Posted by rdrtx1
try:
Code:
#!/bin/bash
Primers=( NULL 'JOHN' )
for y in {1..1}
do
        perl -ple '/'${Primers[$y]}'/ and y/ACGT/TGCA/ and $_ = reverse unless /^>/' test.txt
done

Note that by doing this anything that is in ${Primers[$y]} will be unprotected by quotes from the shell and will be subject to field splitting an globbing..

To illustrate (in an empty directory):
Code:
$ touch foo bar
$ var="a   b*"
$ echo "$var"
a   b*
$ echo ''$var''
a bar


Last edited by Scrutinizer; 03-23-2016 at 12:42 AM..
 

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APC_ADD(3)								 1								APC_ADD(3)

apc_add - Cache a new variable in the data store

SYNOPSIS
bool apc_add (string $key, mixed $var, [int $ttl]) DESCRIPTION
array apc_add (array $values, [mixed $unused = NULL], [int $ttl]) Caches a variable in the data store, only if it's not already stored. Note Unlike many other mechanisms in PHP, variables stored using apc_add(3) will persist between requests (until the value is removed from the cache). PARAMETERS
o $key - Store the variable using this name. $keys are cache-unique, so attempting to use apc_add(3) to store data with a key that already exists will not overwrite the existing data, and will instead return FALSE. (This is the only difference between apc_add(3) and apc_store(3).) o $var - The variable to store o $ttl - Time To Live; store $var in the cache for $ttl seconds. After the $ttl has passed, the stored variable will be expunged from the cache (on the next request). If no $ttl is supplied (or if the $ttl is 0), the value will persist until it is removed from the cache manually, or otherwise fails to exist in the cache (clear, restart, etc.). o $values - Names in key, variables in value. RETURN VALUES
Returns TRUE if something has effectively been added into the cache, FALSE otherwise. Second syntax returns array with error keys. EXAMPLES
Example #1 A apc_add(3) example <?php $bar = 'BAR'; apc_add('foo', $bar); var_dump(apc_fetch('foo')); echo " "; $bar = 'NEVER GETS SET'; apc_add('foo', $bar); var_dump(apc_fetch('foo')); echo " "; ?> The above example will output: string(3) "BAR" string(3) "BAR" SEE ALSO
apc_store(3), apc_fetch(3), apc_delete(3). PHP Documentation Group APC_ADD(3)
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