I have a bash with several processes in it, that I would like to include a progress bar or percentage complete. Below are two separate processes that, so the user knows that something is happening, there is an an indicator for each process.
Maybe, at the start of each new process a printf the for loop followed by another printf when the process completes. I'm not quite sure if this is the best thing to do. Thank you .
Code:
# create BAM Index
for f in /home/cmccabe/Desktop/NGS/API/2-12-2015/*.bam ; do
bname=`basename $f`
pref=${bname%%.bam}
samtools index $f
done
# strip off @PG tags
for f in /home/cmccabe/Desktop/NGS/API/2-12-2015/*.bam ; do
bname=`basename $f`
pref=${bname%%.bam}
samtools view -H $f | sed '/^@PG/d' | samtools reheader - $f > /home/cmccabe/Desktop/NGS/API/2-12-2015/${pref}_newheader.bam
done
Hi
I have a script that execute every X minute for checking new files in a folder and converting to pdf.
Is there any way to start this script automatically on linux startup?. I use sleep function in script with infinite loop.
while
do
killall -u `whoami` -q soffice
soffice... (0 Replies)
Hi
I want to do something that might sound strange.
I have a code that in written in C and is executed at startup (it's a custom process). It occasionally calls some bash scripts.
The process doesn't have any terminal associated with it.
One thing I don't know how to do is to start a... (5 Replies)
Hello all!
I'm writing a script that will catch when an outside process crashes (SIGHUP, right?) without having to loop into infinity.
With that in mind, I came across the trap utility and thought if could be used to monitor another process other than it's own. But from what I've read, I'm... (1 Reply)
Hi!
I'm not really sure if this is the right forum to post this thread in but I'll try anyway.
I was just wondering if it's possible to "take over" a Bash process?
For example, if a user is logged in to my server (where I'm root) can I then somehow "clone" his session so I can see what he's... (1 Reply)
Hey all, I need to launch a script from within 2 other scripts that can run independently of the two parent scripts... Im having a hard time doing this, if anyone knows how please let me know.
More detail.
ScriptA (bash), ScriptB (ksh), ScriptC (bash)
ScriptA, launches ScriptB
ScirptB,... (7 Replies)
Below is a test script to illustrate a problem from a larger script I am writing.
$ cat /tmp/loggingtest
#!/bin/bash
lvcreate -s -l 100%FREE -n var-data-snapshot vg00/var-data 2> >(logger -t "loggingtest.crit") 1> >(logger -t "loggingtest.info")
sync &
wait
lvremove -f... (1 Reply)
Hello, I have another problem with my script - I would like to have a countdown timer visible on the screen, and at the same time, I want te be able to do something else. And when the time runs out, I need to know about that inside the script somehow and do some action. I guess that would require 2... (3 Replies)
Looking to create a script to listen to each output from a task while it is running and launch a function if a specific error message is found at any point and if not to continue uninterrupted.
#!/bin/bash
read checker <<< $(reaver -i mon0 -b 'target bssid' -vv)
if ; then
function
elif... (1 Reply)
I have function f1 and f2, I want it excute five items with different function in the list the the same time with process.
I did a testing in start_build_feature1, it sleep about 100s, in the sleeping start_build_feature2 print nothing, can someone help me modify this scripts
I don't when... (2 Replies)
Hi to all,
I have thousand of files in a folder with names with format "FILE-YYYY-MM-DD-HHMM" for what I want to send the following AWK command
awk '/Code.*/' FILE-2014*
I'd like to separate all files that have the same date to a folder named with the corresponding date. For example, if I... (7 Replies)
Discussion started by: Ophiuchus
7 Replies
LEARN ABOUT LINUX
dbs-edit-patch
DBS-EDIT-PATCH(1) Debian Build System DBS-EDIT-PATCH(1)NAME
dbs-edit-patch - Edit a DBS patch
SYNOPSIS
dbs-edit-patch [options] patch
dbs-edit-patch -h|--help
DESCRIPTION
dbs-edit-patch is script to generate or modify patches for Debian source-packages in DBS format.
WARNING
dbs is deprecated, please switch to the `3.0 (quilt)' Debian source package format instead. See http://wiki.debian.org/Projects/Deb-
Src3.0#FAQ for a short guide how to do it.
OPTIONS -h, --help
Show summary of options.
-t dir, --tmpdir=dir
Directory for the temporary files, default is /tmp or if set $TMP.
-s dir, --sourcedir=dir
Top level directory of the debian-package source-tree, default is the present working directory.
-P dir, --sourcepatchdir=dir
Directory containing upstream patches.
-T dir, --sourcetardir=dir
Directory containing the upstream tarball.
-p level, --strip=level
Striplevel -p of patch (Option -p of diff(1)), accepted values are 0 and 1, default is 0.
ENVIRONMENT VARIABLES
TMP Sets the directory for the temporary files, can be overridden with -t dir.
debian/vars
dbs-edit-patch will automatically use variables defined in the optional debian/vars file.
When a file debian/vars.in exists and debian/vars either does not exist or is older than any of the following files: debian/vars.in,
debian/changelog, debian/rules or debian/control, then dbs-edit-patch will try updating the vars file by running the following command
make -f debian/rules -W debian/vars.in debian/vars
EXAMPLES
Edit the 021_debian patch of Heimdal:
~/heimdal-0.3d> dbs-edit-patch -t/tmp 021_debian
Extracting source heimdal-0.3d.tar.gz ... successful.
Applying patch 001_replay ... successful.
etc.
Copying heimdal-0.3d to heimdal-0.3d-old ... successful.
Applying patch 021_debian ... successful.
Edit files under /tmp/021_debian/heimdal-0.3d as required, then put a short description into /tmp/021_debian/patch-description if desired,
and finally execute /tmp/021_debian/dbs-update-patch to save the results.
Technical note: dbs-edit-patch extracts all patches before 021_debian into /tmp/021_debian/heimdal-0.3d, copies the result to
/tmp/021_debian/heimdal-0.3d-old, and applies the last patch 021_debian (if it exists). Also, it creates a shell script which will create
the diff between the old and new directories:
~/heimdal-0.3d> ls -la /tmp/021_debian
total 12
-rwxr-xr-x 1 bam users 112 Jan 31 13:31 dbs-update-patch*
-rw-r--r-- 1 bam users 0 Jan 31 13:31 patch-description
drwxr-xr-x 14 bam users 4096 Jan 31 13:31 heimdal-0.3d/
drwxr-xr-x 14 bam users 4096 Jan 31 13:31 heimdal-0.3d-old/
drwxr-xr-x 5 bam users 4096 Jan 31 13:31 .stampdir/
~/heimdal-0.3d> cat /tmp/021_debian/dbs-update-patch
#!/bin/sh -e
cd "/tmp/021_debian"
HOOK_DIR="/usr/src/heimdal/debian/dbs-hooks"
test -d "$HOOK_DIR" && run-parts "$HOOK_DIR" --arg update-patch-prediff
find -name "*.bak" -print0 | xargs -0 --no-run-if-empty rm
find -name "*~" -print0 | xargs -0 --no-run-if-empty rm
: > new_patch
test ! -e patch-description || cp patch-description new_patch
diff -ruN heimdal-0.3d-old heimdal-0.3d >> new_patch || test $? -eq 1
mv new_patch /usr/src/heimdal/debian/patches/021_debian
test -d "$HOOK_DIR" && run-parts "$HOOK_DIR" --arg update-patch-postdiff
SEE ALSO diff(1), dbs(7), /usr/share/doc/dbs/
AUTHOR
DBS was written by Adam Heath, modified by Ben Collins, modified and packaged for Debian by Brian May. This manpage was generated by
Andreas Metzler and modified by Robert Luberda.
Debian February 15th, 2011 DBS-EDIT-PATCH(1)
02-19-2016
.