02-13-2016
If you have huge data and need lot of this kind of processing, thenlook Postgresql ex. newest 9.5.
It has builtin really fast JSON and XML input parser using "COPY" and very fast output from JSONtoXML and XMLtoJSON. PG include datatypes JSON, JSONB, XML, ...
PG is SQL DB, but it's also one the fastest noSQL environment to handle JSON, CSV, XML, ... files.
Small json set I use jq to convert/parse but bigger data set I parse using PG command psql.
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
I am trying to use a line of output in an XML file as input in another new XML file for processing purposes via a shell script. Since I am a newbie though, I'm not sure how to do this since the data is different everytime. I am using this technique with static data right now:
echo -n "Running... (5 Replies)
Discussion started by: corwin43
5 Replies
2. Shell Programming and Scripting
Hi All,
I have a xml file for example as described below
<xml>
<address>
<street><street>
<address/>
<isbn>426728783932020308393930303</isbn>
<book>
<name>
</name>
</book>
.
.
.
</xml>
My problem is to get the isbn number from the above described file using ksh script. Could... (6 Replies)
Discussion started by: vinna
6 Replies
3. Shell Programming and Scripting
Hi,
Am new to scripting. :)
Am trying to figure out whether can i use bash scripting to parse an xml file.
Parsing is not just pulling out information according to the pattern but its more of a generic parsing. I should identify the xml hierarchy and pull out information accordingly. It's not a... (2 Replies)
Discussion started by: karthikvela
2 Replies
4. Shell Programming and Scripting
Hi
Is it possible to parse a posted xml data from a remote server in unix shell script. if so how to do that? and i need to give this script path in the push url (in remote server) . how to do this?
I have tried this in asp but could not succeed....so am trying in shell scripting...the thread... (1 Reply)
Discussion started by: aemunathan
1 Replies
5. Shell Programming and Scripting
Hello,
I'm a starting shell scripter and no Perl knowledge. I've trying to do this for a while:
I want to parse an XML file and get certain data out of it and write that data into a CSV file, all this using Shell Scripting (in Bash). Or Perl without any XML Parser/Interpreter (if possible).
... (1 Reply)
Discussion started by: Kage Musha
1 Replies
6. Shell Programming and Scripting
Created a korn shell script, everything is is working except this section, the variable $SYSINFO is being set, but the NASIP & NASDEV are failing, it appears to be treating the config.xml file config directory and xml as the file. Need a second set of eyes to tell me where I am messing up.
#... (3 Replies)
Discussion started by: juanb25
3 Replies
7. Shell Programming and Scripting
Below is a XML I have...
<?xml version="1.0" encoding="UTF-8" ?>
<component
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="urn:XXXXX-www-Install-Manifest manifest.xsd"
xmlns="urn:qqqqq-Install-Manifest"
name="OM"
... (1 Reply)
Discussion started by: dashok.83
1 Replies
8. Shell Programming and Scripting
I have a xml file like this
<bul:collectionStrategy name="strategy1">
<bul:collectionTemplateGroup name="15min group"/>
<bul:collectionTemplateGroup name="hourly group"/>
</bul:collectionStrategy>
<bul:CollectionTemplateGroup name="hourly group" >
... (2 Replies)
Discussion started by: LavanyaP
2 Replies
9. Shell Programming and Scripting
Hi,
I have an XML file in Linux and it contains a long string of characters. The last part of the file is like
.......
.......
.......
CAD</MarketDescription></InvestorTransaction></AdvisorAccount></DivisionAdvisor></Division>... (3 Replies)
Discussion started by: naveed
3 Replies
10. Shell Programming and Scripting
Hi folks
I have a script I wrote that basically parses a bunch of config and xml files works out were to add in the new content then spits out the data into a new file.
It all works - apart from the xml and config file format in the new file
with XML files the original XML (that ends up in... (2 Replies)
Discussion started by: dfinch
2 Replies
LEARN ABOUT DEBIAN
bio::annotation::comment
Bio::Annotation::Comment(3pm) User Contributed Perl Documentation Bio::Annotation::Comment(3pm)
NAME
Bio::Annotation::Comment - A comment object, holding text
SYNOPSIS
$comment = Bio::Annotation::Comment->new();
$comment->text("This is the text of this comment");
$annotation->add_Annotation('comment', $comment);
DESCRIPTION
A holder for comments in annotations, just plain text. This is a very simple object, and justifiably so.
AUTHOR - Ewan Birney
Email birney@ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : $comment = Bio::Annotation::Comment->new( '-text' => 'some text for this comment');
Function: This returns a new comment object, optionally with
text filed
Example :
Returns : a Bio::Annotation::Comment object
Args : a hash with -text optionally set
AnnotationI implementing functions
as_text
Title : as_text
Usage :
Function:
Example :
Returns :
Args :
display_text
Title : display_text
Usage : my $str = $ann->display_text();
Function: returns a string. Unlike as_text(), this method returns a string
formatted as would be expected for te specific implementation.
One can pass a callback as an argument which allows custom text
generation; the callback is passed the current instance and any text
returned
Example :
Returns : a string
Args : [optional] callback
hash_tree
Title : hash_tree
Usage :
Function:
Example :
Returns :
Args :
tagname
Title : tagname
Usage : $obj->tagname($newval)
Function: Get/set the tagname for this annotation value.
Setting this is optional. If set, it obviates the need to
provide a tag to Bio::AnnotationCollectionI when adding
this object. When obtaining an AnnotationI object from the
collection, the collection will set the value to the tag
under which it was stored unless the object has a tag
stored already.
Example :
Returns : value of tagname (a scalar)
Args : new value (a scalar, optional)
Specific accessors for Comments
text
Title : text
Usage : $value = $self->text($newval)
Function: get/set for the text field. A comment object
just holds a single string which is accessible through
this method
Example :
Returns : value of text
Args : newvalue (optional)
value
Title : value
Usage : $value = $self->value($newval)
Function: Alias of the 'text' method
Example :
Returns : value of text
Args : newvalue (optional)
type
Title : type
Usage : $value = $self->type($newval)
Function: get/set for the comment type field. The comment type
is normally found as a subfield within comment sections
in some files, such as SwissProt
Example :
Returns : value of text
Args : newvalue (optional)
perl v5.14.2 2012-03-02 Bio::Annotation::Comment(3pm)