I have a bash that downloads a list of files as a text file using wget. What I now need to do is store those files names and pass them to a download call also using wget.
wget --user=xxxxx--password=xxxxx --xxxx \
https://www.xxxx.com/xxx/file to download -o wget.log
where file to download would be FilterDuplicates.html, then after that downloads file1.bam, then file2.bam, then file3.bam, then file1.vcf.gz, then file2.vcf.gz, then file3.vcf.gz. Each one of the bam files is ~20GB all others are 10MB or less. Thank you .
edit:
It looks like I need to alter the command that downloads the list to include the url, but I'm not sure how.
The script below is giving me grief! The error message says
/download.bash: line 16: syntax error near unexpected token `else'
./download.bash: line 16: `else wget "http://downloads.sourceforge.net/hibernate/hibernate-3.2.5.ga.zip?modtime=1185893922&big_mirror=1"
'
I think it must be a... (1 Reply)
Hi,
I'm trying to write a script that reads filenames from a file and use these filenames in a loop. The filenames are all on one line and the problem is that these filenames have wildcards like * and braces like in them.
Right now what I'm doing is something like this:
echo "reading from... (0 Replies)
I'm trying to search all .odt files in a directory for a string in the text of the file.
I've found a bash script that works, except that it can't handle whitespace in the filenames.
#!/bin/bash
if ; then
echo "Usage: searchodt searchterm"
exit 1
fi
for file in $(ls *.odt); do
... (4 Replies)
I want to create a temp file which is named based on a search string. The search string may contain spaces or characters that aren't supposed to be used in filenames so I want to strip those out.
My thought was to use 'tr' with but the result is the opposite of what I want:
$ echo "test... (5 Replies)
Hi,
I need help regarding below concern.
There is a script and it has 7 existing files(in a path say,. usr/appl/temp/file1.txt) and I need to create one new blank file say “file_count.txt” in the same script itself.
Then the new file <file_count.txt> should store all the 7 filenames and... (1 Reply)
Hello All,
I have a Virtual Machine that I basically use for just testing stuff on. It is running SLES 11.1 and Apache2.
I was able to get Apache2 set-up and working... I was able to insert a basic index.html page (i.e. a simple "Hello World" html page)
just to check and make sure I can... (4 Replies)
hi,
how can i take the file names from a directory and store only the filenames in the file.
suppose i have a directory which contains the following files and subdirectories.
$ ls -ltr
total 16
-rw-rw-r-- 1 adm etc 4 Aug 6 20:37 s1.txt
-rw-rw-r-- 1 adm etc 4 Aug 6 20:37 s2.txt... (11 Replies)
I am attempting to write a bash that starts by using wget and getting the following errors:
Stand-alone code that works:
wget -O getCSV.txt http://172.24.xxx.xxx/data/getCSV.csv
c:\cygwin\home\cmccabe\NGS.sh: line 2: $'\r': command not found
: No such file or directorysh: line 3:... (2 Replies)
In the bash below when the program is opened the download function runs and downloads the getCSV file and on the screen "Downloading getCSV.csv:%" displays and when it completes the menu function is called. However, as of now the bash opens and closes after a few seconds and I'm not sure... (4 Replies)
I have a collection of directories, for example as below
I want to create a loop that goes in the first directory and picks up the *hhz*.sac.pzs
filename in a variable, and the other files matching *hhz*.sac in another variable (however I do not want to pick the *hhz*.sac.pzs). This is because... (4 Replies)
Discussion started by: kristinu
4 Replies
LEARN ABOUT DEBIAN
rbash
RBASH(1) General Commands Manual RBASH(1)NAME
rbash - restricted bash, see bash(1)RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is
used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow-
ing are disallowed or not performed:
o changing directories with cd
o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV
o specifying command names containing /
o specifying a file name containing a / as an argument to the . builtin command
o specifying a filename containing a slash as an argument to the -p option to the hash builtin command
o importing function definitions from the shell environment at startup
o parsing the value of SHELLOPTS from the shell environment at startup
o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators
o using the exec builtin command to replace the shell with another command
o adding or deleting builtin commands with the -f and -d options to the enable builtin command
o using the enable builtin command to enable disabled shell builtins
o specifying the -p option to the command builtin command
o turning off restricted mode with set +r or set +o restricted.
These restrictions are enforced after any startup files are read.
When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script.
SEE ALSO bash(1)GNU Bash-4.0 2004 Apr 20 RBASH(1)
02-08-2016
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