Hello, I have a file, and one column has both positive and negative numbers. Does anyone know how I can calculate the total of all the values (i.e, +ve and -ve).
eg:
col1 col2 col3
data 23 data
data 76 data
data -30 data
Thanks
Khoom (1 Reply)
Hi everybody,
I've got a file with 36074 fields. I need to insert an additional new columns 2,3,4 and 5 after the first field. The columns to insert are the same for all the lines: it's "1" doe the new field 2 and "0" for the rest. I did have a look in the forum and the suggested solution I... (7 Replies)
Hello,
I'm struggling with the following problem in sh script:
Adding a column to the right-end of a file ("master-file": non-constant column number, tab and linux formatted) where the column is the 4th one of file1 (space and DOS formatted)
Changing the header of column 4 of file 1 at the... (4 Replies)
Hi All,
I have a file example.csv which looks like this
GrpID,TargetID,Signal,Avg_Num
CSCH74_1_1,2007,61,256
CSCH74_1_1,212007,647,679
CSCH74_1_1,12007,3,32
CSCH74_1_1,207,299,777
I want the output as
GrpID,TragetID,Signal-CSCH74_1_1,Avg_Num
CSCH74_1_1,2007,61,256... (4 Replies)
Hi All,
I have a file example.csv which looks like this
GrpID,TargetID,Signal,Avg_Num
CSCH74_1_1,2007,61,256
CSCH74_1_1,212007,647,679
CSCH74_1_1,12007,3,32
CSCH74_1_1,207,299,777
I want the output as
GrpID,TragetID,Signal-CSCH74_1_1,Avg_Num
CSCH74_1_1,2007,61,256... (1 Reply)
Hi everyone!
I sometimes need to do some simple arithmetics, like adding a number to a certain column of a file. So I wrote a small function in the .bashrc file, which looks like this
shifter()
{
COL=$1
VAL=$2
FILE=$3
cp $FILE $FILE.shifted
awk 'NF==4 {$(( $COL )) = $(( $COL ))... (6 Replies)
Hi
cat /tmp/xx.txt
1 4
1 5
1 6
2 1
2 1
2 1
i want to add the values of 2nd column resepect to 1st column values..for 1 in 1st column i need sum of all the values in 2nd column ..pls tell me hw to do it?? (8 Replies)
Hello,
I have a data such as this:
ENSGALG00000000189 329 G A 4 2 0
ENSGALG00000000189 518 T C 5 1 0
ENSGALG00000000189 1104 G A 5 1 0
ENSGALG00000000187 3687 G T 5 1 0
ENSGALG00000000187 4533 A T 4 2 0
ENSGALG00000000233 5811 T C 4 2 0
ENSGALG00000000233 5998 C A 5 1 0
I want to... (3 Replies)
Hi Team,
I would like to add two dummy columns at the end of the file. I know how to add the columns using awk . Here is my problem. we have bit strange delimiter
when I od -bc it shows 244 as its binary value.
0002200 060 244 060 244 060 244 066 065 244 060 244 244 012
0... (1 Reply)
Discussion started by: gvkumar25
1 Replies
LEARN ABOUT DEBIAN
bio::factory::sequencefactoryi
Bio::Factory::SequenceFactoryI(3pm) User Contributed Perl Documentation Bio::Factory::SequenceFactoryI(3pm)NAME
Bio::Factory::SequenceFactoryI - This interface allows for generic building of sequences in factories which create sequences (like SeqIO)
SYNOPSIS
# do not use this object directly it is an interface # get a Bio::Factory::SequenceFactoryI object like
use Bio::Seq::SeqFactory;
my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');
my $seq = $seqbuilder->create(-seq => 'ACTGAT',
-display_id => 'exampleseq');
print "seq is a ", ref($seq), "
";
DESCRIPTION
A generic way to build Sequence objects via a pluggable factory. This reduces the amount of code that looks like
if( $type eq 'Bio::PrimarySeq' ) { ... }
elsif( $type eq 'Bio::Seq::RichSeq' ) { ... }
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
create
Title : create
Usage : my $seq = $seqbuilder->create(-seq => 'CAGT',
-id => 'name');
Function: Instantiates new Bio::PrimarySeqI (or one of its child classes)
This object allows us to genericize the instantiation of sequence
objects.
Returns : Bio::PrimarySeqI
Args : initialization parameters specific to the type of sequence
object we want. Typically
-seq => $str,
-display_id => $name
perl v5.14.2 2012-03-02 Bio::Factory::SequenceFactoryI(3pm)