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Full Discussion: Speed up bash loop?
Top Forums Shell Programming and Scripting Speed up bash loop? Post 302960806 by RudiC on Thursday 19th of November 2015 04:42:18 PM
Old 11-19-2015
Well, I obviously missed that: there are n *base_counts.txt files, and for each of them you scan four times through the huge file, so 4 * n * 11,137,660 lines are read.
As has been offered before, with some meaningful samples we perhaps could give some decent help.
Please post at least two ???_unix_corrected.bed (partly) , two *base_counts.txt (partly) files, and a representative part of the huge file so we can build a meaningful test scenario.
 

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GETHUGEPAGESIZES(3)					     Library Functions Manual					       GETHUGEPAGESIZES(3)

NAME
gethugepagesizes - Get the system supported huge page sizes SYNOPSIS
#include <hugetlbfs.h> int gethugepagesizes(long pagesizes[], int n_elem); DESCRIPTION
The gethugepagesizes() function returns either the number of system supported huge page sizes or the sizes themselves. If pagesizes is NULL and n_elem is 0, then the number of huge pages the system supports is returned. Otherwise, pagesizes is filled with at most n_elem page sizes. RETURN VALUE
On success, either the number of huge page sizes supported by the system or the number of huge page sizes stored in pagesizes is returned. On failure, -1 is returned and errno is set appropriately. ERRORS
EINVAL n_elem is less than zero or n_elem is greater than zero and pagesizes is NULL. Also see opendir(3) for other possible values for errno. This error occurs when the sysfs directory exists but cannot be opened. NOTES
This call will return all huge page sizes as reported by the kernel. Not all of these sizes may be usable by the programmer since mount points may not be available for all sizes. To test whether a size will be usable by libhugetlbfs, hugetlbfs_find_path_for_size() can be called on a specific size to see if a mount point is configured. SEE ALSO
oprofile(1), opendir(3), hugetlbfs_find_path_for_size(3), libhugetlbfs(7) AUTHORS
libhugetlbfs was written by various people on the libhugetlbfs-devel mailing list. October 10, 2008 GETHUGEPAGESIZES(3)
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