I have a rather long csh script that works, but it's terribly ungraceful and takes a while from various loops. I only know enough code to get myself into trouble, so I'm looking for some guidance.
I have a large file that is separated at intervals by the same line, like this:
... (2 Replies)
Dear users,
I am new to AWK and have been battling with this one for close to a week now. Some of you did offer some help last week but I think I may not have explained myself very well. So I am trying again.
I have a dataset that has the following format where the datasets repeat every... (5 Replies)
Dear Members,
Problem is suppose i have 50 lines in a file, 40 lines last character is "\" and the remaining 10 lines are good(i mean these 10 lines do not have "\" character)
How can i remove this character from the file.
Thanks (1 Reply)
I have a file that is HTML encoded. Each line has something like this on each line..
<href=http://link.com/username.aspx>username </a> more info.. <a href=http://link.com/info1.aspx>info1</a> more code... <a href=http://link.com/info2.aspx>info2</a>
I have one goal really.. to clean up the... (2 Replies)
I'm trying to write a script that will do an ls of a location, echo it into a file, and then read that file and selectively delete files/folders, so it would go something like this:
cd $CLEAN_LOCN
ls >>$TMP_FILE
while read LINE
do
if LINE = $DONTDELETE
skip
elseif LINE =... (2 Replies)
Hi
I have an alignment file (.fasta) with ~80 sequences. They look like this-
>JV101.contig00066(+):25302-42404|sequence_index=0|block_index=4|species=JV101|JV101_4_0
GAGGTTAATTATCGATAACGTTTAATTAAAGTGTTTAGGTGTCATAATTT
TAAATGACGATTTCTCATTACCATACACCTAAATTATCATCAATCTGAAT... (2 Replies)
Hi,
I want to match the sequence id (sub-string of line starting with '>' and extract the information upto next '>' line ). Please help .
input
> fefrwefrwef X900
AGAGGGAATTGG
AGGGGCCTGGAG
GGTTCTCTTC
> fefrwefrwef X932
AGAGGGAATTGG
AGGAGGTGGAG
GGTTCTCTTC
> fefrwefrwef X937... (2 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
Hi i have a file in which i am doing some processing.
The code is as follows:
#!/bin/ksh
grep DATA File1.txt >> File2.txt
sed 's/DATA//' File2.txt | tr -d ‘ ‘ >> File4.xls
As you can see my output is going in a xl file.The output consist of four columns/feilds out of which the first... (20 Replies)
I have the following script:
awk 'FNR==NR{s+=$3;next;} { print $1 , $2, 100*$3/s }'
and the following file:
>P39PT-1224 Freq 900
cccctacgacggcattggtaatggctcagctgctccggatcccgcaagccatcttggatatgagggttcgtcggcctcttcagccaagg-cccccagcagaacatccagctgatcg
>P39PT-784 Freq 2... (2 Replies)
Discussion started by: Xterra
2 Replies
LEARN ABOUT OSX
strtok_r
STRTOK(3) BSD Library Functions Manual STRTOK(3)NAME
strtok, strtok_r -- string tokens
LIBRARY
Standard C Library (libc, -lc)
SYNOPSIS
#include <string.h>
char *
strtok(char *restrict str, const char *restrict sep);
char *
strtok_r(char *restrict str, const char *restrict sep, char **restrict lasts);
DESCRIPTION
This interface is obsoleted by strsep(3).
The strtok() function is used to isolate sequential tokens in a null-terminated string, str. These tokens are separated in the string by at
least one of the characters in sep. The first time that strtok() is called, str should be specified; subsequent calls, wishing to obtain
further tokens from the same string, should pass a null pointer instead. The separator string, sep, must be supplied each time, and may
change between calls.
The implementation will behave as if no library function calls strtok().
The strtok_r() function is a reentrant version of strtok(). The context pointer last must be provided on each call. The strtok_r() function
may also be used to nest two parsing loops within one another, as long as separate context pointers are used.
The strtok() and strtok_r() functions return a pointer to the beginning of each subsequent token in the string, after replacing the token
itself with a NUL character. When no more tokens remain, a null pointer is returned.
EXAMPLES
The following uses strtok_r() to parse two strings using separate contexts:
char test[80], blah[80];
char *sep = "\/:;=-";
char *word, *phrase, *brkt, *brkb;
strcpy(test, "This;is.a:test:of=the/string\tokenizer-function.");
for (word = strtok_r(test, sep, &brkt);
word;
word = strtok_r(NULL, sep, &brkt))
{
strcpy(blah, "blah:blat:blab:blag");
for (phrase = strtok_r(blah, sep, &brkb);
phrase;
phrase = strtok_r(NULL, sep, &brkb))
{
printf("So far we're at %s:%s
", word, phrase);
}
}
SEE ALSO memchr(3), strchr(3), strcspn(3), strpbrk(3), strrchr(3), strsep(3), strspn(3), strstr(3), wcstok(3)STANDARDS
The strtok() function conforms to ISO/IEC 9899:1990 (``ISO C90'').
BUGS
The System V strtok(), if handed a string containing only delimiter characters, will not alter the next starting point, so that a call to
strtok() with a different (or empty) delimiter string may return a non-NULL value. Since this implementation always alters the next starting
point, such a sequence of calls would always return NULL.
AUTHORS
Wes Peters, Softweyr LLC: <wes@softweyr.com>
Based on the FreeBSD 3.0 implementation.
BSD November 27, 1998 BSD