Sponsored Content
Top Forums Shell Programming and Scripting Extract specific lines based on another file Post 302959929 by alanmathew84 on Sunday 8th of November 2015 02:04:49 AM
Old 11-08-2015
Extract specific lines based on another file

I have a folder containing text files. I need to extract specific lines from the files of this folder based on another file input.txt. How can I do this with awk/sed?

Code:
file1
ARG	81.9	8	81.9	0
LEU	27.1	9	27.1	0
PHE	.0	10	.0	0
ASP	59.8	11	59.8	0
ASN	27.6	12	27.6	0
ALA	.0	13	.0	0
MET	13.1	14	13.1	0
LEU	66.8	15	66.8	0
ARG	21.0	16	21.0	0

file2
SER	57.9	43	57.9	0
PHE	2.4	44	2.4	0
LEU	39.4	45	1.0	38.4
GLN	83.9	46	40.8	43.1
ASN	46.9	47	46.9	0
PRO	47.1	48	4.8	42.3
GLN	86.1	49	83.2	2.9
THR	33.2	50	33.2	0
SER	10.2	51	.9	9.3

input.txt

*file1
10
16
*file2
43
44
49

Desired output

file1
PHE	.0	10	.0	0
ARG	21.0	16	21.0	0

file2
SER	57.9	43	57.9	0
PHE	2.4	44	2.4	0
GLN	86.1	49	83.2	2.9

 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

extract specific lines from file

hi, how would i extract a range of lines in a file by using the line number? ex: file contains: 1 title 2 i want 3 this part 4 to be taken out 5 from this file 6 and sent to 7 another file 8 not needed 9 end of file In this case, i want to copy line number 2 to 7 on a new... (2 Replies)
Discussion started by: apalex
2 Replies

2. Shell Programming and Scripting

extract the lines between specific line number from a text file

Hi I want to extract certain text between two line numbers like 23234234324 and 54446655567567 How do I do this with a simple sed or awk command? Thank you. ---------- Post updated at 06:16 PM ---------- Previous update was at 05:55 PM ---------- found it: sed -n '#1,#2p'... (1 Reply)
Discussion started by: return_user
1 Replies

3. Shell Programming and Scripting

Extract lines of text based on a specific keyword

I regularly extract lines of text from files based on the presence of a particular keyword; I place the extracted lines into another text file. This takes about 2 hours to complete using the "sort" command then Kate's find & highlight facility. I've been reading the forum & googling and can find... (4 Replies)
Discussion started by: DionDeVille
4 Replies

4. UNIX for Dummies Questions & Answers

Extract a specific number from an XML file based on the start and end tags

Hello People, I have the following contents in an XML file ........... ........... .......... ........... <Details = "Sample Details"> <Name>Bob</Name> <Age>34</Age> <Address>CA</Address> <ContactNumber>1234</ContactNumber> </Details> ........... ............. .............. (4 Replies)
Discussion started by: sushant172
4 Replies

5. UNIX for Dummies Questions & Answers

unix: extract a specific list of lines from a file

I would like to extract specific lines from a file and output them into another file. Each line in the file has a unique ID, and I have a specific list of IDs (that are not consecutive) that I wish to extract. for example: 1 aaaaaa bbbcb cccccc 2 aaaaaa bbbbb cccccd 3 aaaaaa bbbab... (6 Replies)
Discussion started by: mert2481
6 Replies

6. Shell Programming and Scripting

Extract specific lines from a file

Hi, I have a file which contains DDL statements- CREATE TABLE, CREATE INDEX, ALTER TABLE etc. I have to only pick CREATE TABLE statements from the file- Source : ---------------------------------------------- --DDL for table abc -------------------------------------------- CREATE TABLE... (4 Replies)
Discussion started by: newb
4 Replies

7. Shell Programming and Scripting

Extracting specific lines of data from a file and related lines of data based on a grep value range?

Hi, I have one file, say file 1, that has data like below where 19900107 is the date, 19900107 12 144 129 0.7380047 19900108 12 168 129 0.3149017 19900109 12 192 129 3.2766666E-02 ... (3 Replies)
Discussion started by: Wynner
3 Replies

8. Shell Programming and Scripting

Combine multiple lines in file based on specific field

Hi, I have an issue to combine multiple lines of a file. I have records as below. Fields are delimited by TAB. Each lines are ending with a new line char (\n) Input -------- ABC 123456 abcde 987 890456 7890 xyz ght gtuv ABC 5tyin 1234 789 ghty kuio ABC ghty jind 1234 678 ght ... (8 Replies)
Discussion started by: ratheesh2011
8 Replies

9. Shell Programming and Scripting

Extract error records based on specific criteria from Unix file

Hi, I look for a awk one liner for below issue. input file ABC 1234 abc 12345 ABC 4567 678 XYZ xyz ght 678 ABC 787 yyuu ABC 789 7890 777 zxr hyip hyu mno uii 678 776 ABC ty7 888 All lines should be started with ABC as first field. If a record has another value for 1st... (7 Replies)
Discussion started by: ratheesh2011
7 Replies

10. Shell Programming and Scripting

Delete specific lines from files based on another file

I have some text files in a folder named ff as follows. I need to delete the lines (in-place editing)in these files based on another file aa.txt. 32bm.txt: 249 253 A P - 0 0 8 0, 0.0 6,-1.4 0, 0.0 2,-0.4 -0.287 25.6-102.0 -74.4 161.1 37.1 13.3 10.9 250... (2 Replies)
Discussion started by: aden
2 Replies
comm(1) 							   User Commands							   comm(1)

NAME
comm - select or reject lines common to two files SYNOPSIS
comm [-123] file1 file2 DESCRIPTION
The comm utility reads file1 and file2, which must be ordered in the current collating sequence, and produces three text columns as output: lines only in file1; lines only in file2; and lines in both files. If the input files were ordered according to the collating sequence of the current locale, the lines written will be in the collating sequence of the original lines. If not, the results are unspecified. OPTIONS
The following options are supported: -1 Suppresses the output column of lines unique to file1. -2 Suppresses the output column of lines unique to file2. -3 Suppresses the output column of lines duplicated in file1 and file2. OPERANDS
The following operands are supported: file1 A path name of the first file to be compared. If file1 is -, the standard input is used. file2 A path name of the second file to be compared. If file2 is -, the standard input is used. USAGE
See largefile(5) for the description of the behavior of comm when encountering files greater than or equal to 2 Gbyte ( 2^31 bytes). EXAMPLES
Example 1 Printing a list of utilities specified by files If file1, file2, and file3 each contain a sorted list of utilities, the command example% comm -23 file1 file2 | comm -23 - file3 prints a list of utilities in file1 not specified by either of the other files. The entry: example% comm -12 file1 file2 | comm -12 - file3 prints a list of utilities specified by all three files. And the entry: example% comm -12 file2 file3 | comm -23 -file1 prints a list of utilities specified by both file2 and file3, but not specified in file1. ENVIRONMENT VARIABLES
See environ(5) for descriptions of the following environment variables that affect the execution of comm: LANG, LC_ALL, LC_COLLATE, LC_CTYPE, LC_MESSAGES, and NLSPATH. EXIT STATUS
The following exit values are returned: 0 All input files were successfully output as specified. >0 An error occurred. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWesu | +-----------------------------+-----------------------------+ |CSI |enabled | +-----------------------------+-----------------------------+ |Interface Stability |Standard | +-----------------------------+-----------------------------+ SEE ALSO
cmp(1), diff(1), sort(1), uniq(1), attributes(5), environ(5), largefile(5), standards(5) SunOS 5.11 3 Mar 2004 comm(1)
All times are GMT -4. The time now is 09:09 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy