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Top Forums Shell Programming and Scripting awk to parse field and include the text of 1 pipe in field 4 Post 302959901 by cmccabe on Saturday 7th of November 2015 10:45:24 AM
Old 11-07-2015
That `awk` produces:

Code:
chr1    955543    955763    AGRN-6|pr=2|gc=75    +    
 
chr1    957571    957852    AGRN-7|pr=3|gc=61.2    +  
   
chr1    970621    970740    AGRN-8|pr=1|gc=57.1    +

The |pr=2, |pr=3, and pr=1 is not needed and there looks to be a line skipped each after each row and that will may be problematic for later analysis.

Thank you Smilie.
 

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DPKG-AWK(1)						      General Commands Manual						       DPKG-AWK(1)

NAME
dpkg-awk - Utility to read a dpkg style db file SYNOPSIS
dpkg-awk [(-f|--file) filename] [(-d|--debug) ##] [(-s|--sort) list] [(-rs|--rec_sep) ??] '<fieldname>:<regex>' ... -- <out_fieldname> .. DESCRIPTION
dpkg-awk Parses a dpkg status file (or other similarly formatted file) and outputs the resulting records. It can use regex on the field values to limit the returned records, it can also be told which fields to output, and it can sort the matched fields. OPTIONS
-f filename --file filename The file to parse. The default is /var/lib/dpkg/status. -d [#] --debug [#] Each time this is specified, it increased the debug level. -s field(s) --sort field(s) A space or comma separated list of fields to sort on. -n field(s) --numeric field(s) A space or comma separated list of fields that should be interpreted as numeric in value. -rs ?? --rec_sep ?? Output this string at the end of each output paragraph. -h --help Display some help. fieldname The fields from the file, that are matched with the regex given. The fieldnames are case insensitive. out_fieldname The fields from the file, that are output for each record. If the first field listed begins with ^, then the list of fields that follows will NOT be output. BUGS
Be warned that the author has only a shallow understanding of the dpkg packaging system, so there are probably tons of bugs in this pro- gram. This program comes with no warranties. If running this program causes fire and brimstone to rain down upon the earth, you will be on your own. This program accesses the dpkg database directly in places, querying for data that cannot be gotten via dpkg. AUTHOR
Adam Heath <doogie@debian.org> DEBIAN
Debian Utilities DPKG-AWK(1)
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