10-28-2015
just add them at the end (file[12] expands to file1 file2). Why don't you try *UCSC* or mayhap a subset of those.
This User Gave Thanks to RudiC For This Post:
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have several files that are being generated every 20 minutes. Each file contains 2 columns. The 1st column is Text, 2nd column is Data.
I would like to generate one single file from all these files as follows:
One instance of 1st column Text, followed by 2nd column Data separated by... (5 Replies)
Discussion started by: subhap
5 Replies
2. UNIX for Dummies Questions & Answers
Hello,
My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns:
File A: (tab-delimited)
PDB CHAIN Start End Fragment
1avq A 171 176 awyfan
1avq A 172 177 wyfany
1c7k A 2 7... (3 Replies)
Discussion started by: InfoSeeker
3 Replies
3. UNIX for Dummies Questions & Answers
Hi,
I'm trying to compare the first column of two files (tab or whitespace delimited, either way's fine, I`ve got both) and print the lines that are identical for the first column of both files. Something like this:
File1
AAA 26 49 7 27 36 33 46 75 73 69
AAAAA 4 10 4 7 10 18 21... (2 Replies)
Discussion started by: vanesa1230
2 Replies
4. Shell Programming and Scripting
Hi all,
I searched through the forum but i can't manage to find a solution. I need to join a set of files placed in a directory (~1600) by column, and obtain an output with first and second column common to each file, but following columns are taken from the file in the list (precisely the fourth... (10 Replies)
Discussion started by: macsx82
10 Replies
5. Shell Programming and Scripting
I have n files (for ex:64 files) with one similar column. Is it possible to combine them all based on that column ?
file1
ax100 20 30 40
ax200 22 33 44
file2
ax100 10 20 40
ax200 12 13 44
file2
ax100 0 0 4
ax200 2 3 4 (9 Replies)
Discussion started by: quincyjones
9 Replies
6. Shell Programming and Scripting
Hi friends,
My file is like:
Second file is :
I need to print the rows present in file one, but in order present in second file....I used
while read gh;do
awk ' $1=="' $gh'" {print >> FILENAME"output"} ' cat listoffirstfile
done < secondfile
but the output I am... (14 Replies)
Discussion started by: CAch
14 Replies
7. UNIX for Dummies Questions & Answers
Hi,
I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column).
I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies
8. UNIX for Dummies Questions & Answers
I have file input
file1
1/1/2013 A 553.0763397 96 16582
1/1/2013 B 459.8333588 195 11992
1/2/2013 A 844.2973022 306 19555
1/2/2013 B 833.9300537 457 20165
1/3/2013 A 563.6917419 396 13879
1/3/2013 B 632.0749969 169 ... (1 Reply)
Discussion started by: radius
1 Replies
9. Shell Programming and Scripting
Hi,
I need to find the difference between 2 files in unix and write the result in the new file
File1:
A
B
File2:
X 123 hajkd
Y 345 adjfka
A 123 djafjhd
B 678 dsndjks
Output file:
X 123 hajkd
Y 345 adjfka
Thanks. (6 Replies)
Discussion started by: nani1984
6 Replies
10. Shell Programming and Scripting
Hello,
I have a file with 2 columns ( tableName , ColumnName) delimited by a Pipe like below . File is sorted by ColumnName.
Table1|Column1
Table2|Column1
Table5|Column1
Table3|Column2
Table2|Column2
Table4|Column3
Table2|Column3
Table2|Column4
Table5|Column4
Table2|Column5
From... (6 Replies)
Discussion started by: nv186000
6 Replies
JOIN(1) BSD General Commands Manual JOIN(1)
NAME
join -- relational database operator
SYNOPSIS
join [-a file_number | -v file_number] [-e string] [-o list] [-t char] [-1 field] [-2 field] file1 file2
DESCRIPTION
The join utility performs an ``equality join'' on the specified files and writes the result to the standard output. The ``join field'' is
the field in each file by which the files are compared. The first field in each line is used by default. There is one line in the output
for each pair of lines in file1 and file2 which have identical join fields. Each output line consists of the join field, the remaining
fields from file1 and then the remaining fields from file2.
The default field separators are tab and space characters. In this case, multiple tabs and spaces count as a single field separator, and
leading tabs and spaces are ignored. The default output field separator is a single space character.
Many of the options use file and field numbers. Both file numbers and field numbers are 1 based, i.e., the first file on the command line is
file number 1 and the first field is field number 1. The following options are available:
-a file_number
In addition to the default output, produce a line for each unpairable line in file file_number.
-e string
Replace empty output fields with string.
-o list
The -o option specifies the fields that will be output from each file for each line with matching join fields. Each element of list
has either the form file_number.field, where file_number is a file number and field is a field number, or the form '0' (zero), repre-
senting the join field. The elements of list must be either comma (',') or whitespace separated. (The latter requires quoting to
protect it from the shell, or, a simpler approach is to use multiple -o options.)
-t char
Use character char as a field delimiter for both input and output. Every occurrence of char in a line is significant.
-v file_number
Do not display the default output, but display a line for each unpairable line in file file_number. The options -v 1 and -v 2 may be
specified at the same time.
-1 field
Join on the field'th field of file1.
-2 field
Join on the field'th field of file2.
When the default field delimiter characters are used, the files to be joined should be ordered in the collating sequence of sort(1), using
the -b option, on the fields on which they are to be joined, otherwise join may not report all field matches. When the field delimiter char-
acters are specified by the -t option, the collating sequence should be the same as sort(1) without the -b option.
If one of the arguments file1 or file2 is '-', the standard input is used.
EXIT STATUS
The join utility exits 0 on success, and >0 if an error occurs.
COMPATIBILITY
For compatibility with historic versions of join, the following options are available:
-a In addition to the default output, produce a line for each unpairable line in both file1 and file2.
-j1 field
Join on the field'th field of file1.
-j2 field
Join on the field'th field of file2.
-j field
Join on the field'th field of both file1 and file2.
-o list ...
Historical implementations of join permitted multiple arguments to the -o option. These arguments were of the form
file_number.field_number as described for the current -o option. This has obvious difficulties in the presence of files named 1.2.
These options are available only so historic shell scripts do not require modification and should not be used.
SEE ALSO
awk(1), comm(1), paste(1), sort(1), uniq(1)
STANDARDS
The join command conforms to IEEE Std 1003.1-2001 (``POSIX.1'').
BSD
July 5, 2004 BSD