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Shell Programming and Scripting
awk to print unique text in field
Post 302957270 by Scrutinizer on Thursday 8th of October 2015 02:24:22 PM
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1. Shell Programming and Scripting
Hi, all
I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes.
sample input:
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Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
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3. Shell Programming and Scripting
Is it possible to print the records that has only 1 value in 2nd column.
Ex:
input
awex1 1
awex1 2
awex1 3
assww 1
ader34 1
ader34 2
output
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Is it possible to modify file like this.
1. Remove all the duplicate names in a define column i.e 4th col
2. Count the no.of unique names separated by ";" and print as a 5th col
thanx in advance!!
Q
input
c1 30 3 Eh2
c10 96 3 Frp
c41 396 3 Ua5;Lop;Kol;Kol
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... (5 Replies)
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I am trying to parse the input in awk to include the |gc= in $4 but am not able to. The below is close:
awk so far:
awk '{sub(/\|]+]++/, ""); print }' input.txt Input
chr1 955543 955763 AGRN-6|pr=2|gc=75 0 +
chr1 957571 957852 AGRN-7|pr=3|gc=61.2 0 +
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Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
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In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
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For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
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In the awk below I am trying to match the value in $4 of file1 with the split value from $4 in file2. I store the value of $4 in file1 in A and the split value (using the _ for the split) in array. I then strore the value in $2 as min, the value in $3 as max, and the value in $1 as chr.
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Hi,
Sure it's an easy one, but it drives me insane.
input ("|" separated):
1|A,B,C,A
2|A,D,D
3|A,B,B
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LEARN ABOUT OPENSOLARIS
getlabel
getlabel(1) User Commands getlabel(1) NAME
getlabel - display the label of files SYNOPSIS
/usr/bin/getlabel [-sS] filename... DESCRIPTION
getlabel displays the label that is associated with each filename. When options are not specified, the output format of the label is dis- played in default format. OPTIONS
-s Display the label that is associated with filename in short form. -S Display the label that is associated with filename in long form. EXIT STATUS
getlabel exits with one of the following values: 0 Successful completion. 1 Unsuccessful completion due to usage error. 2 Unable to translate label. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWtsu | +-----------------------------+-----------------------------+ |Interface Stability |See below. | +-----------------------------+-----------------------------+ The command line is Committed. The output is Not-an-Interface. SEE ALSO
setlabel(1), m_label(3TSOL), label_encodings(4), attributes(5) NOTES
The functionality described on this manual page is available only if the system is configured with Trusted Extensions. SunOS 5.11 11 Jul 2008 getlabel(1)