|
|
Sponsored Content
Top Forums
Shell Programming and Scripting
awk to print unique text in field
Post 302957270 by Scrutinizer on Thursday 8th of October 2015 02:24:22 PM
|
|
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi, all
I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes.
sample input:
for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies
2. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
1 Replies
3. Shell Programming and Scripting
Is it possible to print the records that has only 1 value in 2nd column.
Ex:
input
awex1 1
awex1 2
awex1 3
assww 1
ader34 1
ader34 2
output
assww 1 (5 Replies)
Discussion started by: quincyjones
5 Replies
4. Shell Programming and Scripting
Is it possible to modify file like this.
1. Remove all the duplicate names in a define column i.e 4th col
2. Count the no.of unique names separated by ";" and print as a 5th col
thanx in advance!!
Q
input
c1 30 3 Eh2
c10 96 3 Frp
c41 396 3 Ua5;Lop;Kol;Kol
c62 2 30 Fmp;Fmp;Fmp
... (5 Replies)
Discussion started by: quincyjones
5 Replies
5. Shell Programming and Scripting
I am trying to parse the input in awk to include the |gc= in $4 but am not able to. The below is close:
awk so far:
awk '{sub(/\|]+]++/, ""); print }' input.txt Input
chr1 955543 955763 AGRN-6|pr=2|gc=75 0 +
chr1 957571 957852 AGRN-7|pr=3|gc=61.2 0 +
chr1 970621 ... (7 Replies)
Discussion started by: cmccabe
7 Replies
6. Shell Programming and Scripting
Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
3 Replies
7. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
8. UNIX for Beginners Questions & Answers
For some reason I am having difficulty performing what should be a fairly easy task. I would like to print lines of a file that have a unique value in the first field. For example, I have a large data-set with the following excerpt:
PS003,001 MZMWR/ L-DWD// *
PS003,001... (4 Replies)
Discussion started by: jvoot
4 Replies
9. Shell Programming and Scripting
In the awk below I am trying to match the value in $4 of file1 with the split value from $4 in file2. I store the value of $4 in file1 in A and the split value (using the _ for the split) in array. I then strore the value in $2 as min, the value in $3 as max, and the value in $1 as chr.
If A is... (6 Replies)
Discussion started by: cmccabe
6 Replies
10. UNIX for Beginners Questions & Answers
Hi,
Sure it's an easy one, but it drives me insane.
input ("|" separated):
1|A,B,C,A
2|A,D,D
3|A,B,B
I would like to count the occurence of each capital letters in $2 across the entire file, knowing that duplicates in each record count as 1.
I am trying to get this output... (5 Replies)
Discussion started by: beca123456
5 Replies
LEARN ABOUT CENTOS
ip-addrlabel
IP-ADDRLABEL(8) Linux IP-ADDRLABEL(8) NAME
ip-addrlabel - protocol address label management SYNOPSIS
ip [ OPTIONS ] addrlabel { COMMAND | help } OPTIONS := { -V[ersion] | -s[tatistics] | -r[esolve] | -f[amily] { inet | inet6 | ipx | dnet | link } | -o[neline] } ip addrlabel { add | del } prefix PREFIX [ dev DEV ] [ label NUMBER ] ip addrlabel { list | flush } DESCRIPTION
IPv6 address labels are used for address selection; they are described in RFC 3484. Precedence is managed by userspace, and only the label itself is stored in the kernel. ip addrlabel add - add an address label add an address label entry to the kernel. prefix PREFIX dev DEV the outgoing interface. label NUMBER the label for the prefix. 0xffffffff is reserved. ip addrlabel del - delete an address label delete an address label entry from the kernel. Arguments: coincide with the arguments of ip addrlabel add but the label is not required. ip addrlabel list - list address labels list the current address label entries in the kernel. ip addrlabel flush - flush address labels flush all address labels in the kernel. This does not restore any default settings. SEE ALSO
ip(8) AUTHOR
Manpage by Yoshifuji Hideaki / iproute2 20 Dec 2011 IP-ADDRLABEL(8)