Adding per group and selecting consensus name Post: 302954718

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Top Forums Shell Programming and Scripting Adding per group and selecting consensus name Post 302954718 by Yoda on Thursday 10th of September 2015 11:01:29 AM

09-10-2015

Moderator

An awk approach:-

Code:

awk -F'\t' '
        {
                I = $1 FS $2
                for ( i = 3; i <= 5; i++ )
                {
                        if ( I in R )
                        {
                                if ( R[I] != $NF && $NF != "Non-determinate" )
                                        R[I] = "None"
                        }
                        else
                                R[I] = $NF

                        A[I FS i] += $i
                }
        }
        END {
                for ( k in R )
                {
                        printf "%s\t", k
                        for ( i = 3; i <= 5; i++ )
                                printf "%d\t", A[k FS i]
                        printf "%s\n", R[k]
                }
        }
' file

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LEARN ABOUT SUSE

igawk

IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME

       igawk - gawk with include files

SYNOPSIS

       igawk [ all gawk options ] -f program-file [ -- ] file ...
       igawk [ all gawk options ] [ -- ] program-text file ...

DESCRIPTION

       Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).

       AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like

	      @include getopt.awk

       in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.

OPTIONS

       See gawk(1) for a full description of the AWK language and the options that gawk supports.

EXAMPLES

       cat << EOF > test.awk
       @include getopt.awk

       BEGIN {
	    while (getopt(ARGC, ARGV, "am:q") != -1)
		 ...
       }
       EOF

       igawk -f test.awk

SEE ALSO

       gawk(1)

       Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.

AUTHOR

       Arnold Robbins (arnold@skeeve.com).

Free Software Foundation					    Nov 3 1999								  IGAWK(1)

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igawk