Sponsored Content
Full Discussion: Help reformatting input file
Top Forums UNIX for Dummies Questions & Answers Help reformatting input file Post 302954306 by Fahmida on Monday 7th of September 2015 12:51:38 AM
Old 09-07-2015
Help reformatting input file

Hi,
I have an input file that looks like this (columns are tab delimited:
HTML Code:
Data000005-RA    GO:0003735    GO:0005840    GO:0006412                
Data000005-RA    GO:0003735                                    
Data000009-RA    GO:0003735    GO:0005622    GO:0005840    GO:0006412            
Data000011-RA    GO:0015232    GO:0015886    GO:0016020    GO:0017004            
Data000012-RA    GO:0005524                        
Data000012-RA    GO:0015991    GO:0016820    GO:0005524                
Data000040-RA    GO:0004129    GO:0005506    GO:0009055    GO:0009060    GO:0016021    GO:0020037    GO:0055114
This need to be converted into a two column file and expected output is:
HTML Code:
Data000005-RA    GO:0003735
Data000005-RA    GO:0005840    
Data000005-RA    GO:0006412                
Data000005-RA    GO:0003735                                    
Data000009-RA    GO:0003735
Data000009-RA    GO:0005622
Data000009-RA    GO:0005840
Data000009-RA    GO:0006412            
Data000011-RA    GO:0015232    
Data000011-RA    GO:0015886
Data000011-RA    GO:0016020
Data000011-RA    GO:0017004            
Data000012-RA    GO:0005524                        
Data000012-RA    GO:0015991
Data000012-RA    GO:0016820
Data000012-RA    GO:0005524                
Data000040-RA    GO:0004129
Data000040-RA    GO:0005506
Data000040-RA    GO:0009055
Data000040-RA    GO:0009060
Data000040-RA    GO:0016021
Data000040-RA    GO:0020037
Data000040-RA    GO:0055114
Thanks for your help.
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

Reformatting file

Hi, How can I reformat a file (text file) using unix command. This file was FTP'd from Mainframe and contains some garbage character at the end of each line. Each line contains special characters '<soh>' at the end which should have been spaces when I view it in emacs or nedit. I couldnt do find... (2 Replies)
Discussion started by: mrjunsy
2 Replies

2. Shell Programming and Scripting

Need script to take input from file, match on it in file 2 and input data

All, I am trying to figure out a script to run in windows that will allow me to match on First column in file1 to 8th Column in File2 then Insert file1 column2 to file2 column4 then create a new file. File1: 12345 Sam 12346 Bob 12347 Bill File2:... (1 Reply)
Discussion started by: darkoth
1 Replies

3. Shell Programming and Scripting

awk multiple file reformatting

I hopefully have a simple request - I need to process multiple files reformatting the output based on tags at the beginning of each line. So the data for the new 3 lines of the output file are in the HDR line and then the details are in the DTL tagged lines. for ifile in $indir do echo... (1 Reply)
Discussion started by: jason_v_brown
1 Replies

4. Shell Programming and Scripting

reformatting xml file, sed or awk I think (possibly perl)

I have some xml files that cannot be read using a standard parser, or I am using the wrong parser. The issues seems to be spaces in some of the tags. Here is a sample,<UgUn 2 > <Un> -0.426753 </Un> </UgUn>The parser isn't able to find the number 2, so that information is lost, etc. It seems... (16 Replies)
Discussion started by: LMHmedchem
16 Replies

5. Shell Programming and Scripting

Help for reformatting text file and creating new format

Hi all, I have an input file like 1,date,company,, 1,date,comapny,, 2,000,,,567,ACT,00,,,,KKG,M1,D45,,67J,+4500000000 2,000,,,567,ACT,00,,,,KKG,M6,D49,,56J,+6000 2,000,,,567,ACT,00,,7,,KKG,M3,D58,,68h,-70000 2,000,,,567,ACT,00,,,,KKG,M9,D95,,34m,0.00 3,total what i require is 1.I... (2 Replies)
Discussion started by: selvankj
2 Replies

6. Shell Programming and Scripting

Stripping characters from a file and reformatting according to another one

Dear experts, my problem is pretty tricky. I want to change a file (see attached input.txt), according to another file (help.txt). The output that is desired is in output.txt. The example is attached. Note that -dashes should not be treated specially, they are considered normal characters,... (2 Replies)
Discussion started by: TheTransporter
2 Replies

7. Shell Programming and Scripting

Reformatting single column text file starting new line when finding particular string

Hi, I have a single colum file and I need to reformat the file so that it creates a new line every time it come to an IP address and the following lines are corresponding rows until it comes to the next IP address. I want to turn this 172.xx.xx.xx gwpusprdrp02_pv seinwnprd03... (7 Replies)
Discussion started by: kieranfoley
7 Replies

8. Shell Programming and Scripting

Reformatting a file for biological purpose

Dear ALL, I would really appreciate if you could help me in reformatting a file in this way: The file refers to a list of genetic coordinates, each lines has a score value and the associated chromosome is listed in the line starting with chrom . If more coordinates are found, the start... (2 Replies)
Discussion started by: paolo.kunder
2 Replies

9. UNIX for Dummies Questions & Answers

Need help in reformatting the input

Hi i want to print line which is mentioned as below 615213:1;20150725;20250722;0|11;20150831;20150831;100|14;20150725;20160723;2 in below format. ' 615213: 1;20150725;20250722;0 615213: 11;20150831;20150831;100 615213: 14;20150725;20160723;2 please help me and suggest me how to... (9 Replies)
Discussion started by: scriptor
9 Replies

10. Shell Programming and Scripting

Reformatting of an output file

Hi, i've got the following output file: 170724_1600 | SYSTEM | 449 | 282 | 167 | 62 170724_1600 | CCS_SCP_DATA | 200 | 88 | 112 | 44 170724_1600 | CCS_SCP_SUBS_I | 2001 | 1751 | 250 | 87 170724_1600 | UIS_CDR_INDEX | 2001 | 1 | 2000 | 0 170724_1600 | LCP_INDEX | 200 | 5 | 195 | 2... (4 Replies)
Discussion started by: nms
4 Replies
TZSELECT(8)						      System Manager's Manual						       TZSELECT(8)

NAME
tzselect - select a time zone SYNOPSIS
tzselect DESCRIPTION
The tzselect program asks the user for information about the current location, and outputs the resulting time zone description to standard output. The output is suitable as a value for the TZ environment variable. All interaction with the user is done via standard input and standard error. ENVIRONMENT VARIABLES
AWK Name of a Posix-compliant awk program (default: awk). TZDIR Name of the directory containing time zone data files (default: /usr/local/etc/zoneinfo). FILES
TZDIR/iso3166.tab Table of ISO 3166 2-letter country codes and country names. TZDIR/zone.tab Table of country codes, latitude and longitude, TZ values, and descriptive comments. TZDIR/TZ Time zone data file for time zone TZ. EXIT STATUS
The exit status is zero if a time zone was successfully obtained from the user, nonzero otherwise. SEE ALSO
newctime(3), tzfile(5), zdump(8), zic(8) TZSELECT(8)
All times are GMT -4. The time now is 09:02 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy