Find between lines start and end: awk with bash variables Post: 302954088

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

String as both start and end anchors in awk

Not sure if the title of this thread makes sense, but hopefully my explanation will. I'm using awk to print some stats from an apache accesslog. I would like to specify the regexp condition where only the two root pages of "index.html" and "/" are counted in my results. What I can't figure out...

2. Shell Programming and Scripting

read a string from its end to its start and stop when you find a specific character

How can I do this? Actually I have a file which contains a path e.g. /home/john/Music/hello.mp3 and I want to take only the filename (hello.mp3) So, I need to read the file from its end to its start till the character "/" Is this possible? Thanks, I am sure you'll not disappoint me here! Oh,...

3. UNIX for Dummies Questions & Answers

Find Quarter Start and End Dates

Dear Members, Depending on the current date i should find out the start and end dates of the quarter. ex: Today date is 14-Nov-2011 then Quarter start date should be Oct 1 2011 and Quarter End date should be Dec 31 2011. How can i do this? Thanks Sandeep

4. Shell Programming and Scripting

Fetching a set of lines with start and end

Hi Folks, Need help in fetching a group of lines with a start and end strings. Example is shown below. start#morning tea jog breakfast end start#afternoon lunch work chat end start#evening snacks tea chat

5. Shell Programming and Scripting

Remove lines between the start string and end string including start and end string Python

Hi, I am trying to remove lines once a string is found till another string is found including the start string and end string. I want to basically grab all the lines starting with color (closing bracket). PS: The line after the closing bracket for color could be anything (currently 'more')....

6. Shell Programming and Scripting

awk to count start and end keyword in a line

Hello fellow awkers and seders: need to figure out a way to ensure a software deployment has completed by checking its trace file in which I can store the deployment results as follows: echo $testvar ===== Summary - Deploy Result - Start ===== ===== Summary - Deploy Result - End =====...

7. Shell Programming and Scripting

Get the lines from logfile within start and end date

Hi guys, I am having the below logfile,date in yyyy-mm-dd 2013-08-02 *some content* 2013-08-02 *some content* 2013-08-02 *some content* 2013-08-03 *some content* 2013-08-05 *some content* from the above logfile i need to get the lines between the two timestamps,if i give...

8. Shell Programming and Scripting

awk to remove lines that do not start with digit and combine line or lines

I have been searching and trying to come up with an awk that will perform the following on a converted text file (original is a pdf). 1. Since the first two lines are (begin with) text they are removed 2. if $1 is a number then all text is merged (combined) into one line until the next...

9. UNIX for Beginners Questions & Answers

How do delete certain lines alone which are matching with start and end string values in file?

Hi, In my previous post ( How to print lines from a files with specific start and end patterns and pick only the last lines? ), i have got a help to get the last select statement from a file, now i need to remove/exclude the output from main file: Input File format: SELECT ABCD, DEFGH,...

10. UNIX for Beginners Questions & Answers

How to print lines from a files with specific start and end patterns and pick only the last lines?

Hi, I need to print lines which are matching with start pattern "SELECT" and END PATTERN ";" and only select the last "select" statement including the ";" . I have attached sample input file and the desired input should be as: INPUT FORMAT: SELECT ABCD, DEFGH, DFGHJ, JKLMN, AXCVB,...

LEARN ABOUT DEBIAN

glam2mask

GLAM2MASK(1)							   glam2 Manual 						      GLAM2MASK(1)

NAME

       glam2mask - masks a GLAM2 motif in sequences

SYNOPSIS

       glam2mask [options] my_motif.glam2 my_seqs.fa

DESCRIPTION

       glam2mask masks a glam2 motif out of sequences, so that weaker motifs can be found. Masking replaces residues aligned to key positions with
       the symbol 'x'. By alternately applying glam2 and glam2mask several times, it is possible to find the strongest, second-strongest,
       third-strongest, etc. motifs in a set of sequences.

OPTIONS (DEFAULT SETTINGS)
       -o
	   Output file (stdout).

       -x
	   Mask character (x).

SEE ALSO

       glam2format(1), glam2(1), glam2-purge(1), glam2scan(1)

       The full Hypertext documentation of GLAM2 is available online at http://bioinformatics.org.au/glam2/ or on this computer in
       /usr/share/doc/glam2/.

REFERENCE

       If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and
       deletions, PLoS Computational Biology (in press).

AUTHORS

       Martin Frith
	   Author of GLAM2.

       Timothy Bailey
	   Author of GLAM2.

       Charles Plessy <plessy@debian.org>
	   Formatted this manpage in DocBook XML for the Debian distribution.

COPYRIGHT

       The source code and the documentation of GLAM2 are released in the public domain.

GLAM2 1056							    05/19/2008							      GLAM2MASK(1)