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Full Discussion: Run script on multiple files
Top Forums UNIX for Dummies Questions & Answers Run script on multiple files Post 302953538 by mutley2202 on Saturday 29th of August 2015 05:45:47 AM
Old 08-29-2015
Run script on multiple files

Hi Guys,
I've been having a look around to try and understand how i can do the below however havent come across anything that will work.

Basically I have a parser script that I need to run across all files in a certain directory, I can do this one my by one on comand line however I have 100's of files to do.

Could anyone be kind enough to help out ?

On command line I use the below command
Code:
./parsercgf -dict cus3 -file_format cus3 -parse_file file_name.p >  file_name.txt

Note the items shown in red are the input file and output file, my files are actually all named differently (file name includes numbers,letters and underscores) I need the output name to be exactly the same as the input name just with a different extension on the output file.

Thanks for your help as aways.
 

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set_color(1)							       fish							      set_color(1)

NAME
set_color - set_color - set the terminal color set_color - set the terminal color Synopsis set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR] Description Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple, cyan, white and normal. o -b, --background Set the background color o -c, --print-colors Prints a list of all valid color names o -h, --help Display help message and exit o -o, --bold Set bold or extra bright mode o -u, --underline Set underlined mode o -v, --version Display version and exit Calling set_color normal will set the terminal color to whatever is the default color of the terminal. Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey font color, while set_color --bold white will result in a white font color. Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator. set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of ncurses and recompile fish against it in order to fix this issue. Version 1.23.1 Sun Jan 8 2012 set_color(1)
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