Hi,
I have to search those statements from the file which starts from "shanky"(only shanky, shanky09 or 09shanky is not allowed) and ends with ");". These two string can be in a same line or different line. And also i have to negate those lines which starts with #.
Can any one please give me... (2 Replies)
How can I pass $var_find variable as argment to find command?
test.sh
var_find=' \( -name "*.xml" -o -name "*.jsp" \) '
echo "${var_find}"
find . -type f ${var_find} -print
# Below statement works fine.. I want to replace this with the above..
#find . \( -name "*.xml" -o -name... (4 Replies)
Hello All,
I have a file which is having below type of data,
Jul 19 2011 | 123456
Jul 19 2011 | 123456
Jul 20 2011 | 123456
Jul 20 2011 | 123456
Here I wanted to grep for date pattern as below, so that it should only grep "Jul 20" OR "Jul ... (9 Replies)
user 10
values
content is:
musage.py
yes
value
user 11
values
content is:
gusage.py
yes
value
how to print "user" string line by searching "content is:" string and "usage.py" string in perl (8 Replies)
Hello :)
I have this file
cat employee_list
Name : jack
Gender: m
ID : 4512
DOB : 03/27/1980
hire date : 04/23/2012
Nationality: US
marital status : single
=====================
Name : mick
Gender: m
ID : 1256
DOB : 03/27/1970
Hire date : 012/10/2011
Nationality: US
Marital... (4 Replies)
Want to fetch a column with multiple pattern using awk.
How to achieve the same.
Tried
cat test
address : 10.63.20.92/24
address : 10.64.22.93/24
address : 10.53.40.91/24
cat test | awk '{print $3}' |awk -F "/" '{print $1}'
10.63.20.92
10.64.22.93
10.53.40.91
Is there any... (2 Replies)
I am working on AIX operating system.
I want to search list of Article Id for given Set Date (which are present in a seperate file input.txt)
art_list.csv
------------
"Article ID" |"Ad Description" |"Pyramid"|"Pyramid Desc "|"ProductTypeId"|"Set Date "|... (3 Replies)
#!/usr/bin/ksh
a="Run successfully"
cd $APPS
ls -l *.txt | while read $txt
do
if then
cp $APPS/$txt cp $hist/$txt
else
rm $APPS/$txt
echo "Files has been removed"
fi
done
New in shell script please help me out
Around 100 txt files in $APPS dir i want to search pattern from... (8 Replies)
Discussion started by: Kalia
8 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)