Sponsored Content
Full Discussion: Sort file using pipe
Top Forums Shell Programming and Scripting Sort file using pipe Post 302950878 by Aia on Wednesday 29th of July 2015 04:10:13 PM
Old 07-29-2015
Quote:
[...] output.bam.hist.txt > epilepsy70_average.txt | sort -k2n epilepsy70_average.txt > sort.txt
Code:
... output.bam.hist.txt | sort -k2n  > sort.txt

if you want to have an epilepsy70_average.txt and a sort.txt
Code:
... output.bam.hist.txt | tee epilepsy70_average.txt | sort -k2n > sort.txt


Last edited by Aia; 07-29-2015 at 05:21 PM..
This User Gave Thanks to Aia For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

help needed with sort. pipe and popen()

Suppose I want to find the number of uniq lines in a file. I use the following command: sort file1 | uniq -c | wc -l But if for some reason sort fails, the above command returns 0 as the answer. Why would sort fail ? sort makes use of directories /tmp or /var/tmp to store temporary files.... (7 Replies)
Discussion started by: the_learner
7 Replies

2. UNIX for Advanced & Expert Users

Script to sort the files and append the extension .sort to the sorted version of the file

Hello all - I am to this forum and fairly new in learning unix and finding some difficulty in preparing a small shell script. I am trying to make script to sort all the files given by user as input (either the exact full name of the file or say the files matching the criteria like all files... (3 Replies)
Discussion started by: pankaj80
3 Replies

3. Shell Programming and Scripting

Convert CSV file (with double quoted strings) to pipe delimited file

Hi, could some help me convert CSV file (with double quoted strings) to pipe delimited file: here you go with the same data: 1,Friends,"$3.99 per 1,000 listings",8158here " 1,000 listings " should be a single field. Thanks, Ram (8 Replies)
Discussion started by: Ram.Math
8 Replies

4. Shell Programming and Scripting

sort text having delimiter with "|" (pipe)

i am having text file below NARGU S S 12358 SALES REP |22| Acccount/s RAJU R B 64253 SALES REP |12| Acccount/s RUKMAN S 32588 SALES REP |10| Acccount/s NARGUND S S 12356... (3 Replies)
Discussion started by: suryanarayana
3 Replies

5. UNIX for Dummies Questions & Answers

Pipe binary file matches grep results to file

I am using grep to match a pattern, but the output is strange. $ grep -r -o "pattern" * Gives me: Binary file foo1 matches Binary file foo2 matches Binary file foo3 matches To find the lines before/after, I then have to use the following on each file: $ strings foo1 | grep -A1 -B1... (0 Replies)
Discussion started by: chipperuga
0 Replies

6. Shell Programming and Scripting

Sort help: How to sort collected 'file list' by date stamp :

Hi Experts, I have a filelist collected from another server , now want to sort the output using date/time stamp filed. - Filed 6, 7,8 are showing the date/time/stamp. Here is the input: #---------------------------------------------------------------------- -rw------- 1 root ... (3 Replies)
Discussion started by: rveri
3 Replies

7. Shell Programming and Scripting

How to ignore Pipe in Pipe delimited file?

Hi guys, I need to know how i can ignore Pipe '|' if Pipe is coming as a column in Pipe delimited file for eg: file 1: xx|yy|"xyz|zzz"|zzz|12... using below awk command awk 'BEGIN {FS=OFS="|" } print $3 i would get xyz But i want as : xyz|zzz to consider as whole column... (13 Replies)
Discussion started by: rohit_shinez
13 Replies

8. SuSE

Is this iostat pipe to sort service request command correct?

Hi, my os is SLES 10 from sort iostat as my output does not include rkB/s and wkB/s I probably have to adjust the key position, so is the following iostat pipe to sort service request command correct? oracle@vmc_stallite:~> iostat -x | sort -nrk11 sda 0.96 ... (4 Replies)
Discussion started by: jediwannabe
4 Replies

9. Shell Programming and Scripting

How to cut a pipe delimited file and paste it with another file to form a comma separated outputfile

Hello ppl I have a requirement to split (cut in unix) a file (A.txt) which is a pipe delimited file into A1.txt and A2.txt Now I have to join (paste in unix) this A2.txt with external file A3.txt to form output file A4.txt which should be CSV (comma separated file) so that third party can... (25 Replies)
Discussion started by: etldev
25 Replies

10. Shell Programming and Scripting

awk pipe to sort

In the below awk to add a sort by smallest to largest should it be added after the END? Thank you :). BEGIN { FS="*" } # Read search terms from file1 into 's' FNR==NR { s next } { # Check if $5 matches one of the search terms for(i in s) { if($5 ~ i) { ... (4 Replies)
Discussion started by: cmccabe
4 Replies
X2SYS_MERGE(1gmt)					       Generic Mapping Tools						 X2SYS_MERGE(1gmt)

NAME
x2sys_merge - Merge an updated COEs tables SYNOPSIS
x2sys_merge -Amain_COElist.d -Mnew_COElist.d DESCRIPTION
x2sys_merge will read two crossovers data base and output the contents of the main one updated with the COEs in the second one. The second file should only contain updated COEs relatively to the first one. That is, it MUST NOT contain any new two tracks intersections (This point is NOT checked in the code). This program is useful when, for any good reason like file editing NAV correction or whatever, one had to recompute only the COEs between the edited files and the rest of the database. -A Specify the file main_COElist.d with the main crossover error data base. -M Specify the file new_COElist.d with the newly computed crossover error data base. OPTIONS
No space between the option flag and the associated arguments. EXAMPLES To update the main COE_data.txt with the new COEs estimations saved in the smaller COE_fresh.txt, try x2sys_merge -ACOE_data.txt -MCOE_fresh.txt > COE_updated.txt SEE ALSO
x2sys_binlist(1), x2sys_cross(1), x2sys_datalist(1), x2sys_get(1), x2sys_init(1), x2sys_list(1), x2sys_put(1), x2sys_report(1) GMT 4.5.7 15 Jul 2011 X2SYS_MERGE(1gmt)
All times are GMT -4. The time now is 04:41 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy