Running a KSH file from VPS on Godaddy Post: 302944499

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Top Forums Shell Programming and Scripting Running a KSH file from VPS on Godaddy Post 302944499 by uksatman on Tuesday 19th of May 2015 04:16:27 PM

05-19-2015

Registered User

the file its self i run is a ksh

but the code i gave you is from a "thank you page " after a payment from pay pal.

the code part is

Code:

// Redirect to custom page on purchase
Am_Di::getInstance()->hook->add(Am_Event::THANKS_PAGE, 'onThanksPage');
function onThanksPage(Am_Event $event){
/* @var $di Am_Di */
$di = Am_Di::getInstance();
/* @var $invoice Invoice */
$invoice = $event->getInvoice();
/* @var $controller ThanksController */
$controller = $event->getController();

$controller->redirectLocation('/compsetup');
}

// Exec C/N script
Am_Di::getInstance()->hook->add(Am_Event::USER_MENU, 'myAddMenuItem');
function myAddMenuItem(Am_Event $event)
{
    $menu = $event->getMenu();
    $menu->addPage(
        array(
            'id' => 'compsetup-id',
            'controller' => 'compsetup',
            'module' => 'default',
            'label' => "Complete Setup",
            'order' => 500
    ));
}
 
class CompsetupController extends Am_Controller // a Zend_Controller_Action successor
{
    function indexAction()
    {
        $user = $this->getDi()->user; //currently authenticated customer or throws exception if no auth
 
        $this->view->title = "Complete Setup";
        $this->view->content = doScriptExec();
        $this->view->display('layout.phtml');
    }
}

function doScriptExec() {
// Get list of used products
$prodids = file_get_contents(__DIR__ . "/used_products.txt");
foreach (Am_Lite::getInstance()->getAccess() as $a) {
  if ((strtotime($a['begin_date']) < time()) && (strtotime($a['expire_date']) > strtotime("today")) && (!strstr($prodids, "$a[access_id]\n"))) {
    $access_id = $a['access_id'];
  }
}
  if (!$access_id) return "<p style=\"color: RED;\">You have already generated a code for a connection or have not bought a membership. If this you feel is an error, please email the site owner.</p>";
  if (!$_REQUEST['corn']) {
    return '<form method="post" action="#"><select name="corn"><option value="c">C</option><option value="n">N</option><option value="mg">MG</option></select><input type="submit" value="Setup" /></form>';
  } else {
    $arg = $_REQUEST['corn'];
    $prodids = $prodids . "$access_id\n";
    file_put_contents(__DIR__ . "/used_products.txt", $prodids);
    
return shell_exec(__DIR__ . "/codegen $arg");  }
}

as started this works 80-99% on my vps so is a working live script.

but i want to put the script on my godaddy account as closing my vps and moving

so i need to now how to change the bottom to run the script from there

loads of sites say ssh user@host and then the part for file
but cant seem to work
i think needs the ssh keys set up

i even tried

ssh root@host 'bash -s' < /codegen to get a sintext error

Last edited by uksatman; 05-19-2015 at 05:52 PM..

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cd-hit-para

CD-HIT-PARA.PL(1)						   User Commands						 CD-HIT-PARA.PL(1)

NAME

       cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs

SYNOPSIS

       cd-hit-para.pl options

DESCRIPTION

	      This  script  divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel.  After
	      all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.

	      You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).

   Requirements:
	      1 When run this script over a network, the directory where you

	      run the scripts and the input files must be available on all the remote hosts with identical path.

	      2 If you choose "ssh" to submit jobs, you have to have

	      passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.

	      3 I suggest to use queuing system instead of ssh,

	      I currently support PBS and SGE

	      4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d

	      cd-hit-div cd-hit-div.pl must be in same directory where this script is in.

       Options

       -i input filename in fasta format, required

       -o output filename, required

       --P program, "cd-hit" or "cd-hit-est", default "cd-hit"

       --B filename of list of hosts,

	      requred unless -Q or -L option is supplied

       --L number of cpus on local computer, default 0

	      when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
	      just use "--L 1" unless you have enough RAM for each cpu

       --S Number of segments to split input DB into, default 64

       --Q number of jobs to submit to queue queuing system, default 0

	      by default, the program use ssh mode to submit remote jobs

       --T type of queuing system, "PBS", "SGE" are supported, default PBS

       --R restart file, used after a crash of run

       -h print this help

       More cd-hit/cd-hit-est options can be speicified in command line

	      Questions, bugs, contact Weizhong Li at liwz@sdsc.edu

cd-hit-para.pl 4.6-2012-04-25					    April 2012							 CD-HIT-PARA.PL(1)