KSH - Unix -AIX - db2
**************
Get the input from the user say '123' (It varies)
Then i want to connect to a database say "D1"
then i want th extract from the database by giving "select * from tablename where input = '123'
I also want to connect to another database "D2"
then i... (3 Replies)
Hi,
I want the command to retrieve the existing user information such as
* authorization
* Profile
* role
* exipre(expiration date of login)
* inactive
please tell me how to do that
Thank you. (3 Replies)
Hi,
I would like to know how can I get lines from a text file that match no more than 2 '>'. Example:
Input file:
a >cr1 4 a>b b>c
a >cr2 5 a>b
Output file:
a >cr2 5 a>b
Thanks in advance (2 Replies)
Hi
I have the following script:
#!/bin/sh
gcc -o program program.c
./program &
PID=$!
where i execute a C program and i get its pid. I want to retrieve information about this program (e.g memory consumption) using command top.
So far i have: top -d 1.0 -p $PID
But i dont know how to... (6 Replies)
I have two files. The first containing a header and six columns of data.
Example file 1:
Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position
787066 SNP_A-8575395 RS6650104 1 NOCALL 564477
786872 SNP_A-8575125 RS10458597 1 AA ... (13 Replies)
not getting anywhere with this
an xml file contains multiple clients set up with same tags, different values.
I need to parse the file for client foo, and change the value of tag "64bit" from false to true.
cat clients.xml
<Client type"FIX">
<ClientName>foo</ClientName>... (3 Replies)
awk/sed newbie here. I have a HTML file and from that file and I would like to retrieve a text word.
<font face=arial size=-1><li><a href=/value_for_clients/Tokyo/abc_process.txt>abc</a> NDK Version: 4.0 </li>
<font face=arial size=-1><li><a... (6 Replies)
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
I need to know what are the commands in Solaris to retrieve the below information about the hardware platform.
1. Chipset information (information about various hardware controller cards on the mother boards, system BIOS versions, PCI firmware version etc..)
2. Serial number of the work... (2 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
bio::tools::geneid
Bio::Tools::Geneid(3pm) User Contributed Perl Documentation Bio::Tools::Geneid(3pm)NAME
Bio::Tools::Geneid - Results of one geneid run
SYNOPSIS
use Bio::Tools::Geneid;
my $gid = Bio::Tools::Geneid(-file => "geneid.out");
while (my $gene = $gid->next_prediction)
{
my @transcripts = $gene->transcripts;
foreach my $t (@transcripts)
{
my @exons = $t->exons;
foreach my $e (@exons)
{
printf("Exon %d..%d
", $e->start, $e->end);
}
}
}
DESCRIPTION
This is the parser for the output of geneid by Enrique Blanco and Roderic Guigo (IMIM-UPF). See http://www1.imim.es/software/geneid. It
relies on native geneid output format internally and will work with geneid versions 1.0 and 1.1. Currently this module supports only the
default mode of operation which is to predict exons and assemble an optimal gene prediction.
It takes either a file handle or a file name and returns a Bio::SeqFeature::Gene::GeneStructure object.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Keith James
Email: kdj@sanger.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : $obj->new(-file = "<geneid.out");
$obj->new(-fh => *GI);
Function: Constructor for geneid wrapper. Takes either a file
: or filehandle
Returns : L<Bio::Tools::Geneid>
next_prediction
Title : next_prediction
Usage : while($gene = $geneid->next_prediction)
{
# do something
}
Function: Returns the gene structure prediction of the geneid result
file. Call this method repeatedly until FALSE is returned.
Returns : A Bio::SeqFeature::Gene::GeneStructure object
Args : None
_add_exon
Title : _add_exon
Usage : $obj->_add_exon($gene, $transcript, ... exon data ...)
Function: Adds a new exon to both gene and transcript from the data
: supplied as args
Example :
Returns : Nothing
_set_strand
Title : _set_strand
Usage : $obj->_set_strand($gene)
Function: Sets the overall gene strand to the same strand as all
: the exons if they are all on the same strand, or to strand 0
: if the exons are on different strands.
Example :
Returns : Nothing
_target_id
Title : _target_id
Usage : $obj->_target_id
Function: get/set for genomic sequence id
Example :
Returns : A target ID
perl v5.14.2 2012-03-02 Bio::Tools::Geneid(3pm)