KSH - Unix -AIX - db2
**************
Get the input from the user say '123' (It varies)
Then i want to connect to a database say "D1"
then i want th extract from the database by giving "select * from tablename where input = '123'
I also want to connect to another database "D2"
then i... (3 Replies)
Hi,
I want the command to retrieve the existing user information such as
* authorization
* Profile
* role
* exipre(expiration date of login)
* inactive
please tell me how to do that
Thank you. (3 Replies)
Hi,
I would like to know how can I get lines from a text file that match no more than 2 '>'. Example:
Input file:
a >cr1 4 a>b b>c
a >cr2 5 a>b
Output file:
a >cr2 5 a>b
Thanks in advance (2 Replies)
Hi
I have the following script:
#!/bin/sh
gcc -o program program.c
./program &
PID=$!
where i execute a C program and i get its pid. I want to retrieve information about this program (e.g memory consumption) using command top.
So far i have: top -d 1.0 -p $PID
But i dont know how to... (6 Replies)
I have two files. The first containing a header and six columns of data.
Example file 1:
Number SNP ID dbSNP RS ID Chromosome Result_Call Physical Position
787066 SNP_A-8575395 RS6650104 1 NOCALL 564477
786872 SNP_A-8575125 RS10458597 1 AA ... (13 Replies)
not getting anywhere with this
an xml file contains multiple clients set up with same tags, different values.
I need to parse the file for client foo, and change the value of tag "64bit" from false to true.
cat clients.xml
<Client type"FIX">
<ClientName>foo</ClientName>... (3 Replies)
awk/sed newbie here. I have a HTML file and from that file and I would like to retrieve a text word.
<font face=arial size=-1><li><a href=/value_for_clients/Tokyo/abc_process.txt>abc</a> NDK Version: 4.0 </li>
<font face=arial size=-1><li><a... (6 Replies)
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
I need to know what are the commands in Solaris to retrieve the below information about the hardware platform.
1. Chipset information (information about various hardware controller cards on the mother boards, system BIOS versions, PCI firmware version etc..)
2. Serial number of the work... (2 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
bio::tools::spidey::exon
Bio::Tools::Spidey::Exon(3pm) User Contributed Perl Documentation Bio::Tools::Spidey::Exon(3pm)NAME
Bio::Tools::Spidey::Exon - A single exon determined by an alignment
SYNOPSIS
# See Bio::Tools::Spidey::Results for a description of the context.
# an instance of this class is-a Bio::SeqFeature::SimilarityPair
# coordinates of the exon (recommended way):
print "exon from ", $exon->start(),
" to ", $exon->end(), "
";
# the same (feature1() inherited from Bio::SeqFeature::FeaturePair)
print "exon from ", $exon->feature1()->start(),
" to ", $exon->feature1()->end(), "
";
# also the same (query() inherited from Bio::SeqFeature::SimilarityPair):
print "exon from ", $exon->query()->start(),
" to ", $exon->query()->end(), "
";
# coordinates on the matching EST (recommended way):
print "matches on EST from ", $exon->est_hit()->start(),
" to ", $exon->est_hit()->end(), "
";
# the same (feature2() inherited from Bio::SeqFeature::FeaturePair)
print "matches on EST from ", $exon->feature2()->start(),
" to ", $exon->feature2()->end(), "
";
# also the same (subject() inherited from Bio::SeqFeature::SimilarityPair):
print "exon from ", $exon->subject()->start(),
" to ", $exon->subject()->end(), "
";
DESCRIPTION
This class inherits from Bio::SeqFeature::SimilarityPair and represents an exon on a genomic sequence determined by similarity, that is, by
aligning an EST sequence (using Spidey in this case). Consequently, the notion of query and subject is always from the perspective of the
genomic sequence: query refers to the genomic seq, subject to the aligned EST hit. Because of this, $exon->start(), $exon->end() etc will
always return what you expect.
To get the coordinates on the matching EST, refer to the properties of the feature returned by est_hit().
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Ryan Golhar
Email golharam@umdnj.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
percentage_id
Title : percentage_id
Usage : $obj->percentage_id
Function: This is the percent id as reported by Spidey
Returns : value of percentage_id
Args :
est_hit
Title : est_hit
Usage : $est_feature = $obj->est_hit();
Function: Returns the EST hit pointing to (i.e., aligned to by Spidey) this
exon (i.e., genomic region). At present, merely a synonym for
$obj->feature2().
Returns : An Bio::SeqFeatureI implementing object.
Args :
mismatches
Title : mismatches
Usage : $obj->mismatches;
Function: Returns the mismatches of the cDNA to (i.e., aligned to by Spidey) this
exon (i.e., genomic region).
Returns : value of mismatches.
Args :
gaps
Title : gaps
Usage : $obj->gaps;
Function: Returns the gaps of the cDNA to (i.e., aligned to by Spidey) this
exon (i.e., genomic region).
Returns : value of gaps.
Args :
donor
Title : donor
Usage : $obj->donor;
Function: Returns 0 if a splice donor site does not exist, or
1 if a splice donor site exists
Returns : value of existence of donor splice site (0 or 1)
Args :
acceptor
Title : acceptor
Usage : $obj->acceptor;
Function: Returns 0 if a splice acceptor site does not exist, or
1 if a splice acceptor site exists
Returns : value of existence of acceptor splice site (0 or 1)
Args :
perl v5.14.2 2012-03-02 Bio::Tools::Spidey::Exon(3pm)