Sponsored Content
Full Discussion: Transpose Messy Data
Top Forums UNIX for Advanced & Expert Users Transpose Messy Data Post 302943029 by 91674io on Monday 4th of May 2015 07:38:50 PM
Old 05-04-2015
Thanks for the reply.

The data file is a large data file from the Federal government.

I would like to read the data using stat software packages.

The lines end with \r\n .

Field 4 is a text field. It can have a \n character embedded in it. Stat software package tends to incorrectly split a record with a \n character into two records. Commas are a legitimate part of field 4 (so I should not have had it removed in the sample output). Field 4 is all caps.

I have tried things like

Code:
awk -F"|" '{ print $1f"|"$4F }' < patienttest2.txt | sed 's/,/comma/g' | sed 's/|/,/' | sed 's/;/,/g' | awk -F , '{for (i=2;i<=NF;i++) if ($i>=0) print $1 FS $i}' | sed 's/co
mma/,/g' |

extracting field 1 (the id variable) and field 4 (the value of intereset) from a file

changing "," to "comma" because lowercase letters are not in the datafile

change the pipe to a comma.

the 2nd awk statement was to reshape fields 1 and 4 so that there a line with the id variable for each field 4.

the last sed is to swap "comma" out for "," .

Thanks!
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to transpose data elements in awk

Hi, I have an input data file :- Test4599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,2,2,Rain Test90,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,1,1,0,Not Rain etc.... I wanted to transpose these data to:-... (2 Replies)
Discussion started by: ahjiefreak
2 Replies

2. Shell Programming and Scripting

How to transpose a table of data using awk

Hi. I have this data below:- v1 28 14 1.72414 1.72414 1.72414 1.72414 1.72414 v2 77 7 7.47126 6.89655 6.89655 6.89655 6.89655 v3 156 3 21.2644 21.2644 20.6897 21.2644 20.6897 v4 39 3 1.72414 1.72414 1.72414 1.72414 1.72414 v5 155 1 21.2644 23.5632 24.1379 23.5632 24.1379 v6 62 2 2.87356... (2 Replies)
Discussion started by: ahjiefreak
2 Replies

3. Shell Programming and Scripting

Transpose columns to Rows : Big data

Hi, I did read a few posts on the subjects, tried out a few solutions, but did not solve my problem. https://www.unix.com/302121568-post11.html https://www.unix.com/shell-programming-scripting/137953-large-file-columns-into-rows-etc-4.html Please help. Problem very similar to the second link... (15 Replies)
Discussion started by: genehunter
15 Replies

4. Shell Programming and Scripting

Transpose Daily Data from Column to Row.

Hi I'm looking to transpose Linux data from a daily report that logs every 10mins like below. After the first "comma" I need the daily total for Col2 and Col3 transposed like below. The new transposed format below will then be exported to Microsoft Excel for Reporting. Any help would be... (9 Replies)
Discussion started by: ravzter
9 Replies

5. Shell Programming and Scripting

Transpose Data from Columns to rows

Hello. very new to shell scripting and would like to know if anyone could help me. I have data thats being pulled into a txt file and currently have to manually transpose the data which is taking a long time to do. here is what the data looks like. Server1 -- Date -- Other -- value... (7 Replies)
Discussion started by: Mikes88
7 Replies

6. Shell Programming and Scripting

Transpose Column of Data to Rows

I can no longer find my commands, but I use to be able to transpose data with common fields from a single column to rows using a command line. My data is separated as follows: NAME=BOB ADDRESS=COLORADO PET=CAT NAME=SUSAN ADDRESS=TEXAS PET=BIRD NAME=TOM ADDRESS=UTAH PET=DOG I would... (7 Replies)
Discussion started by: docdave78
7 Replies

7. Shell Programming and Scripting

Transpose data as rows using awk

Hi I have below requirement, need help One file contains the meta data information and other file would have the data, match the column from file1 and with file2 and extract corresponding column value and display in another file File1: CUSTTYPECD COSTCENTER FNAME LNAME SERVICELVL ... (1 Reply)
Discussion started by: ravlapo
1 Replies

8. Shell Programming and Scripting

Help with transpose data content

Hi, Below is my input file: c116_g1_i1 -,-,-,+ c118_g2_i1 +,+ c118_g3_i1 + c120_g1_i1 +,+,+,+ . . Desired Output File c116_g1_i1 - c116_g1_i1 - c116_g1_i1 - c116_g1_i1 + c118_g2_i1 + c118_g2_i1 + (3 Replies)
Discussion started by: perl_beginner
3 Replies

9. UNIX for Beginners Questions & Answers

Transpose the data

Hi All, I have sort of a case to transpose data from rows to column input data Afghanistan|10000|1 Albania|25000|4 Algeria|25000|7 Andorra|10000|4 Angola|25000|47 Antigua and Barbuda|25000|23 Argentina|5000|3 Armenia|100000|12 Aruba|20000|2 Australia|50000|2 I need to transpose... (3 Replies)
Discussion started by: radius
3 Replies

10. UNIX for Beginners Questions & Answers

Transpose large data in UNIX

Hi I have the following sample of data: my full data dimention is 900,000* 1119 rs987435 C G 1 1 1 0 2 rs345783 C G 0 0 1 0 0 rs955894 G T 1 1 2 2 1 rs6088791 ... (7 Replies)
Discussion started by: marwah
7 Replies
SED(1)								   User Commands							    SED(1)

NAME
sed - stream editor for filtering and transforming text SYNOPSIS
sed [OPTION]... {script-only-if-no-other-script} [input-file]... DESCRIPTION
Sed is a stream editor. A stream editor is used to perform basic text transformations on an input stream (a file or input from a pipe- line). While in some ways similar to an editor which permits scripted edits (such as ed), sed works by making only one pass over the input(s), and is consequently more efficient. But it is sed's ability to filter text in a pipeline which particularly distinguishes it from other types of editors. -n, --quiet, --silent suppress automatic printing of pattern space -e script, --expression=script add the script to the commands to be executed -f script-file, --file=script-file add the contents of script-file to the commands to be executed --follow-symlinks follow symlinks when processing in place -i[SUFFIX], --in-place[=SUFFIX] edit files in place (makes backup if extension supplied) -l N, --line-length=N specify the desired line-wrap length for the `l' command --posix disable all GNU extensions. -r, --regexp-extended use extended regular expressions in the script. -s, --separate consider files as separate rather than as a single continuous long stream. -u, --unbuffered load minimal amounts of data from the input files and flush the output buffers more often --help display this help and exit --version output version information and exit If no -e, --expression, -f, or --file option is given, then the first non-option argument is taken as the sed script to interpret. All remaining arguments are names of input files; if no input files are specified, then the standard input is read. E-mail bug reports to: bonzini@gnu.org . Be sure to include the word ``sed'' somewhere in the ``Subject:'' field. COMMAND SYNOPSIS
This is just a brief synopsis of sed commands to serve as a reminder to those who already know sed; other documentation (such as the tex- info document) must be consulted for fuller descriptions. Zero-address ``commands'' : label Label for b and t commands. #comment The comment extends until the next newline (or the end of a -e script fragment). } The closing bracket of a { } block. Zero- or One- address commands = Print the current line number. a text Append text, which has each embedded newline preceded by a backslash. i text Insert text, which has each embedded newline preceded by a backslash. q Immediately quit the sed script without processing any more input, except that if auto-print is not disabled the current pattern space will be printed. Q Immediately quit the sed script without processing any more input. r filename Append text read from filename. R filename Append a line read from filename. Commands which accept address ranges { Begin a block of commands (end with a }). b label Branch to label; if label is omitted, branch to end of script. t label If a s/// has done a successful substitution since the last input line was read and since the last t or T command, then branch to label; if label is omitted, branch to end of script. T label If no s/// has done a successful substitution since the last input line was read and since the last t or T command, then branch to label; if label is omitted, branch to end of script. c text Replace the selected lines with text, which has each embedded newline preceded by a backslash. d Delete pattern space. Start next cycle. D Delete up to the first embedded newline in the pattern space. Start next cycle, but skip reading from the input if there is still data in the pattern space. h H Copy/append pattern space to hold space. g G Copy/append hold space to pattern space. x Exchange the contents of the hold and pattern spaces. l List out the current line in a ``visually unambiguous'' form. n N Read/append the next line of input into the pattern space. p Print the current pattern space. P Print up to the first embedded newline of the current pattern space. s/regexp/replacement/ Attempt to match regexp against the pattern space. If successful, replace that portion matched with replacement. The replacement may contain the special character & to refer to that portion of the pattern space which matched, and the special escapes 1 through 9 to refer to the corresponding matching sub-expressions in the regexp. w filename Write the current pattern space to filename. W filename Write the first line of the current pattern space to filename. y/source/dest/ Transliterate the characters in the pattern space which appear in source to the corresponding character in dest. Addresses Sed commands can be given with no addresses, in which case the command will be executed for all input lines; with one address, in which case the command will only be executed for input lines which match that address; or with two addresses, in which case the command will be executed for all input lines which match the inclusive range of lines starting from the first address and continuing to the second address. Three things to note about address ranges: the syntax is addr1,addr2 (i.e., the addresses are separated by a comma); the line which addr1 matched will always be accepted, even if addr2 selects an earlier line; and if addr2 is a regexp, it will not be tested against the line that addr1 matched. After the address (or address-range), and before the command, a ! may be inserted, which specifies that the command shall only be executed if the address (or address-range) does not match. The following address types are supported: number Match only the specified line number. first~step Match every step'th line starting with line first. For example, ``sed -n 1~2p'' will print all the odd-numbered lines in the input stream, and the address 2~5 will match every fifth line, starting with the second. (This is an extension.) $ Match the last line. /regexp/ Match lines matching the regular expression regexp. cregexpc Match lines matching the regular expression regexp. The c may be any character. GNU sed also supports some special 2-address forms: 0,addr2 Start out in "matched first address" state, until addr2 is found. This is similar to 1,addr2, except that if addr2 matches the very first line of input the 0,addr2 form will be at the end of its range, whereas the 1,addr2 form will still be at the beginning of its range. addr1,+N Will match addr1 and the N lines following addr1. addr1,~N Will match addr1 and the lines following addr1 until the next line whose input line number is a multiple of N. REGULAR EXPRESSIONS
POSIX.2 BREs should be supported, but they aren't completely because of performance problems. The sequence in a regular expression matches the newline character, and similarly for a, , and other sequences. BUGS
E-mail bug reports to bonzini@gnu.org. Be sure to include the word ``sed'' somewhere in the ``Subject:'' field. Also, please include the output of ``sed --version'' in the body of your report if at all possible. COPYRIGHT
Copyright (C) 2003 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU- LAR PURPOSE, to the extent permitted by law. SEE ALSO
awk(1), ed(1), grep(1), tr(1), perlre(1), sed.info, any of various books on sed, the sed FAQ (http://sed.sf.net/grabbag/tutorials/sed- faq.txt), http://sed.sf.net/grabbag/. The full documentation for sed is maintained as a Texinfo manual. If the info and sed programs are properly installed at your site, the command info sed should give you access to the complete manual. sed version 4.1.5 July 2010 SED(1)
All times are GMT -4. The time now is 10:49 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy