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Top Forums Shell Programming and Scripting Replace delimeter between quotes with \| using sed or awk Post 302943010 by RudiC on Monday 4th of May 2015 03:07:52 PM
Old 05-04-2015
The specification that you give and the sample result are not in agreement, and I doubt the code snippet you present does anything as it hat syntax and semantic errors. Would this come near to your desired result:
Code:
awk -F\" '{for (i=2; i<=NF; i+=2) gsub(/\|/,"#%@#%@#%@",$i)} 1' OFS=\" file
123456789|"SYN#%@#%@#%@THESIS MED CHEM PTY. LTD."|C||100.00|22|"AB""C#%@#%@#%@Corp"|"""XYZ"|"CDEF"""|""|""

 

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Bio::Graphics::Glyph::hat(3pm)				User Contributed Perl Documentation			    Bio::Graphics::Glyph::hat(3pm)

NAME
Bio::Graphics::Glyph::hat - The "hat" glyph SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>. DESCRIPTION
This glyph draws an inverted V parallel to the sequence segment. It is different from other glyphs in that it is designed to work with DAS tracks. The inverted V is drawn BETWEEN subparts as if you specified a connector type of "hat". OPTIONS This glyph takes only the standard options. See Bio::Graphics::Glyph for a full explanation. Option Description Default ------ ----------- ------- -fgcolor Foreground color black -outlinecolor Synonym for -fgcolor -bgcolor Background color turquoise -fillcolor Synonym for -bgcolor -linewidth Line width 1 -height Height of glyph 10 -font Glyph font gdSmallFont -connector Connector type 0 (false) -connector_color Connector color black -label Whether to draw a label 0 (false) -description Whether to draw a description 0 (false) -strand_arrow Whether to indicate 0 (false) strandedness -hilite Highlight color undef (no color) BUGS
Please report them. SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD AUTHOR
Allen Day <day@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::hat(3pm)
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