Hi,
I have a list of 70 files in a directory and I need to merge the content of each file into one big matrix file (71 columns x 3060 rows).
Each file has the following format only two columns per file:
unique identifier1
randomtext1 randomtext1
a 5
b 3
c 6
d 3
e 2... (11 Replies)
Input_file
data1 USA 100 ASE
data3 UK 20 GWQR
data4 Brazil 40 QWE
data2 Scotland 60 THWE
data5 USA 40 QWERR
Reference_file
USA 12312 34532
1324 Brazil 23321
231 3421 Scotland
342 34235 UK
231 141 England... (1 Reply)
Dear all,
Please help me ,,,,
if I have input file like this
A_AA960715 leucine-rich repeat-containing protein GO:0006952 defense response P
A_AA960715 leucine-rich repeat-containing protein GO:0008152 metabolic process P
A_AA960715 leucine-rich... (5 Replies)
Hello, hopefully this is an easy on for the AWK guru's out there. I'm having some trouble figuring out how to match+merge data in 2 files into 1 single report.
I've got my 2 files filtered and delimited, just need to MATCH $3 in file1 to $1 in file2, then put $0 from File1 and $2+$3 from File2... (6 Replies)
Hi All,
Need your inputs for the below.
I have 2 different servers 611 & 610, where i would be running two scripts. And would would be running one script from 611 at every 4 hours to merge the data from the 2 servers into 2 files and send a mail.
so below is the code snippet for 611:
... (3 Replies)
Hi,
Anyone did experience to merge data at same column but different row previously by using awk, sed, perl, etc?
Input File:
SSO12256
SSO0001
thiD-1
rbsK-1
SSO0006
SSO0007
SSO0008
SSO0009
SSO0010
SSO0011
Desired Output File: (5 Replies)
I have two input file.:
File 1 is a large reference sequence (A large Fasta sequence);
File 1 (is a file which first line is the header description and line other ">" is its corresponding word and counting from 1 till end of file);
>Data_1
ASWDADAQTWQQGSAAAAASDAFAFA
.
.
File 2 is... (31 Replies)
Need help figuring out how to merge data from a file. I have a large txt file with some data that needs to be merged from separate lines into one line.
Doug.G|3/12/2011|817-555-5555|Portland
Doug.G|3/12/2011|817-555-5522|Portland
Steve.F|1/11/2007|817-555-5111|Portland... (5 Replies)
Discussion started by: cdubu2
5 Replies
LEARN ABOUT DEBIAN
bup-margin
bup-margin(1) General Commands Manual bup-margin(1)NAME
bup-margin - figure out your deduplication safety margin
SYNOPSIS
bup margin [options...]
DESCRIPTION
bup margin iterates through all objects in your bup repository, calculating the largest number of prefix bits shared between any two
entries. This number, n, identifies the longest subset of SHA-1 you could use and still encounter a collision between your object ids.
For example, one system that was tested had a collection of 11 million objects (70 GB), and bup margin returned 45. That means a 46-bit
hash would be sufficient to avoid all collisions among that set of objects; each object in that repository could be uniquely identified by
its first 46 bits.
The number of bits needed seems to increase by about 1 or 2 for every doubling of the number of objects. Since SHA-1 hashes have 160 bits,
that leaves 115 bits of margin. Of course, because SHA-1 hashes are essentially random, it's theoretically possible to use many more bits
with far fewer objects.
If you're paranoid about the possibility of SHA-1 collisions, you can monitor your repository by running bup margin occasionally to see if
you're getting dangerously close to 160 bits.
OPTIONS --predict
Guess the offset into each index file where a particular object will appear, and report the maximum deviation of the correct answer
from the guess. This is potentially useful for tuning an interpolation search algorithm.
--ignore-midx
don't use .midx files, use only .idx files. This is only really useful when used with --predict.
EXAMPLE
$ bup margin
Reading indexes: 100.00% (1612581/1612581), done.
40
40 matching prefix bits
1.94 bits per doubling
120 bits (61.86 doublings) remaining
4.19338e+18 times larger is possible
Everyone on earth could have 625878182 data sets
like yours, all in one repository, and we would
expect 1 object collision.
$ bup margin --predict
PackIdxList: using 1 index.
Reading indexes: 100.00% (1612581/1612581), done.
915 of 1612581 (0.057%)
SEE ALSO bup-midx(1), bup-save(1)BUP
Part of the bup(1) suite.
AUTHORS
Avery Pennarun <apenwarr@gmail.com>.
Bup unknown-bup-margin(1)