awk script to parse case with information in two fields of file
The below awk parser works for most data inputs, but I am having trouble with the last one. The problem is in the below rules steps 1 and 2 come from $2 (NC_000013.10:g.20763686_20763687delinsA) and steps 3 and 4 come from $1 (NM_004004.5:c.34_35delGGinsT).
Code:
Parse Rules:
The header is skipped and
1. 4 zeros after the NC_ (not always the case) and the digits before the .
2. g. ### (before underscore) _### (# after the _)
3. letters after the "del" until the “ins”
4. letters after the "ins"
Desired output: 13 20763686 20763687 GG T
suppose if u have a file like that
Hen ABCCSGSGSGJJJJK 15
Cock ABCCSGGGSGIJJJL 15
* * * * * * : * * * . * * * :
Hen CFCDFCSDFCDERTF 30
Cock CHCDFCSDHCDEGFI 30
* . * * * * * * * : * * :* : : .
The output shud be
where there is : and .
It shud... (4 Replies)
I have a file name version.properties with the following data:
major.version=14
minor.version=234
I'm trying to write a grep expression to only put "14" to stdout. The following is not working.
grep "major.version=(+)" version.properties
What am I doing wrong? (6 Replies)
Hi everyone,
I'm trying to use the "join" function for more than 1 field. Since it's not possible as it is, I want to take my input files and concatenate the joining fields as 1 field (separated by "|"). I wrote 2 awk script to do and undo it (see below). However I'm new to awk and I'm certain I... (5 Replies)
When parsing multiple fields in a file using AWK, how do you group by one of the fields and parse by delimiters?
to clarify
If a file had
tom | 223-2222-4444 , randofield
ivan | 123-2422-4444 , random filed
... | and , are the delimiters ...
How would you group by the social security... (4 Replies)
Hi,
I want to split/parse certain bits of the hex data into another field.
Example:
Input data is
Word1: 4f72abfd
Output:
Parse bits (5 to 0) into field word1data1=0x00cd=205 decimal
Parse bits (7 to 6) into field word1data2=0x000c=12 decimal
etc.
Word2: efff3d02
Parse bits (13 to... (1 Reply)
Hello,
I have a log file , i want to delete the lines of the log file which is match with 1st and 5th field with different patterns. Once it will meet with that condition it will delete that line from the log . I dont want to create any temp file over there.
Successfully able to retrieve the... (1 Reply)
Hi Unix gurus..
I have a file which has below data, It has several MQ Queue statistics;
QueueName= 'TEST1'
CreateDate= '2009-10-30'
CreateTime= '13.45.40'
QueueType= Predefined
QueueDefinitionType= Local
QMinDepth= 0
QMaxDepth= 0
QueueName= 'TEST2'
CreateDate= '2009-10-30'... (6 Replies)
I have a special case that awk could be used but I do not have the skill. Trying to create a final output file (indel_parse.txt) that is created from using some information from each of the two files (attached).
parse rules:
The header is skipped FNR>1
1. 4 zeros after the NC_ (not... (2 Replies)
Hello,
I am working parsing a large input file1(field CFA)
I have to compare the the file1 field(CFA byte 88-96) with the content of the file2(It contains only one field) and and insert rows equal
in another file.
Here is my code and sample input file:
... (7 Replies)
I have a file of ~500,000 entries in the following:
file.txt
chr1 11868 12227 ENSG00000223972.5 . + HAVANA exon . gene_id "ENSG00000223972.5"; transcript_id "ENST00000456328.2"; gene_type "transcribed_unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type... (17 Replies)
Discussion started by: cmccabe
17 Replies
LEARN ABOUT DEBIAN
irsend
IRSEND(1) User Commands IRSEND(1)NAME
irsend - basic LIRC program to send infra-red commands
SYNOPSIS
irsend [options] DIRECTIVE REMOTE CODE [CODE...]
DESCRIPTION
Asks the lircd daemon to send one or more CIR (Consumer Infra-Red) commands. This is intended for remote control of electronic devices such
as TV boxes, HiFi sets, etc.
DIRECTIVE can be:
SEND_ONCE - send CODE [CODE ...] once
SEND_START - start repeating CODE
SEND_STOP - stop repeating CODE
LIST - list configured remote items
SET_TRANSMITTERS - set transmitters NUM [NUM ...]
SIMULATE - simulate IR event
REMOTE is the name of a remote, as described in the lircd configuration file.
CODE is the name of a remote control key of REMOTE, as it appears in the lircd configuration file.
NUM is the transmitter number of the hardware device.
For the LIST DIRECTIVE, REMOTE and/or CODE can be empty:
LIST "" "" - list all configured remote names
LIST REMOTE "" - list all codes of REMOTE
LIST REMOTE CODE - list only CODE of REMOTE
The SIMULATE command only works if it has been explicitly enabled in lircd.
-h --help
display usage summary
-v --version
display version
-d --device
use given lircd socket [/var/run/lirc/lircd]
-a --address=host[:port]
connect to lircd at this address
-# --count=n
send command n times
EXAMPLES
irsend LIST DenonTuner ""
irsend SEND_ONCE DenonTuner PROG-SCAN
irsend SEND_ONCE OnkyoAmpli VOL-UP VOL-UP VOL-UP VOL-UP
irsend SEND_START OnkyoAmpli VOL-DOWN ; sleep 3
irsend SEND_STOP OnkyoAmpli VOL-DOWN
irsend SET_TRANSMITTERS 1
irsend SET_TRANSMITTERS 1 3 4
irsend SIMULATE "0000000000000476 00 OK TECHNISAT_ST3004S"
FILES
/etc/lirc/lircd.conf
Default lircd configuration file. It should contain all the remotes, their infra-red codes and the corresponding timing and wave-
form details.
DIAGNOSTICS
If lircd is not running (or /var/run/lirc/lircd lacks write permissions) irsend aborts with the following diagnostics:
"irsend: could not connect to socket"
"irsend: Connection refused" (or "Permission denied").
SEE ALSO
The documentation for lirc is maintained as html pages. They are located under html/ in the documentation directory.
lircd(8), mode2(1), smode2(1), xmode2(1), irrecord(1), irw(1), http://www.lirc.org.
irsend 0.9.0-pre1 October 2010 IRSEND(1)
04-08-2015
.