I assume that what you meant by:
was:
Note that these comparisons are case sensitive. (In at least one of your other threads, you had "Phox2B" instead of "PHOX2B".)
Hi,
I have a simple question:
I need to enter some text in a text file at a certain place via perl.
I would first need to find that specific text in the file and then I would like to insert a line after that particular line.
Say I have this text file:
I am a great Perl Programmer
I... (1 Reply)
how to wrote a script that reads an input from the reader (dir name) and then answer yes to all questions in the script unless the answer to any of the questions contains a certain string?
example:
$] script.sh dir_name
$] question_1: (answer should be y right after the question is echoed,... (3 Replies)
I have a space delimited text file with 1,000,000+ columns? I would only like to view specific ones (let's say through 1:10), how can I do that? Thanks! (3 Replies)
Hi
I am stucked in the below script .I want to input with yes/no from the user and then execute the code inside if but it is not working .I just need the logic as where I am wrong so that i can use the same in my work .
then
echo "Hi All"
fi
].
Please suugest . (4 Replies)
Hi
I have a file like so:
Code:
Frank Peter Tony Robert Mike 1 2 3 4 5 5 4 2 3 1 4 3 1 5 2
My out should look like this:
Peter
Tony
Mike
and so on....
I have the first part done to ask the user to... (8 Replies)
When I enter Solaris mail command, I get many emails on the screen on scrolling. How can I get it in one by one. BTW, if I delete the long list of emails by d command at the end, rest of the emails comes in one after other :rolleyes:
Thanks... (0 Replies)
HI
i have written a script to ask input from the user.
this script should promote the user for y/n input. if user enters anyother input then y/n
the script promotes him again. this below code is working fine for all the cases.
except for space and enter " if i give space and enter it is... (2 Replies)
have three big data file, however I just need to see the mentioned below one line form the all the file which has SERVER_CONNECTION Value
File 1
export SERVER_CONNECTION=//dvlna002:10001/SmartServer
File2
export SERVER_CONNECTION=///SmartServer
File3
export... (1 Reply)
Hi,
I need to create a test text file with the special characters \342\200\223 in it and to be able to use sed maybe to delete them
I tried doing it using vi by pressing CTRL-V and then typing 342 but it does not work. After pressing CTRL-V and typing 342 it seems to just insert the numbers... (1 Reply)
Hi,
This is a script which to create an opvn user, I want which answer automatically to a certain part so, I try this, it works without the red part but I must type manually.. :
#!/bin/bash
## Environnement ##
LC_ALL=C
## Paths ##
rsa_dir="etc/openvpn/easy-rsa"... (10 Replies)
Discussion started by: Arnaudh78
10 Replies
LEARN ABOUT DEBIAN
ace::sequence::transcript
Ace::Sequence::Transcript(3pm) User Contributed Perl Documentation Ace::Sequence::Transcript(3pm)NAME
Ace::Sequence::Transcript - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the transcripts
@genes = $seq->transcripts;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a transcripts()
call to an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 168:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-05-22 Ace::Sequence::Transcript(3pm)