The perl command is not executing? I am trying to run the .pl in my cygwin home directory (C:\cygwin\home\cmccabe) using ${id}.txt.hg19_multianno.txt (located in the annovar directory) as the input file to be formatted and $FILENAME is the output file to be saved. The .pl is attached as well. Thank you .
Code:
matrix() {
printf "\n\n"
cd 'C:\Users\cmccabe\Desktop\annovar'
my $FILENAME = 'L:\NGS\3_BUSINESS\Matrix\Torrent\matrix_${id}.txt';
$( perl -ne 'chomp; system ("perl ~/matrix.pl < ./${id}.txt.hg19_multianno.txt")' > )$FILENAME) )
printf "Process complete and new file saved in ($FILENAME), Are there additional target gene patients? Y/N "; read match_choice
case "$match_choice" in
[yY]) id=""; menu ;;
[nN]) id=""; printf "\n Goodbye! /n/n " ;;
esac
}
Hello,
I am trying to write a bash script function to present the user a menu of options. The following is what I have so far:
function MainMenu {
while ]
do
echo "--------------------------------------------------------------------------------"
echo... (4 Replies)
I have a main menu
quit=n
while
do
clear
echo
echo "1. General system information"
echo "2. Hardware utilisation information"
echo "3. File management"
echo "4. User information"
echo "5. Information on network connectivity"
echo "6. Information on processes"
echo "Q.Quit" ... (3 Replies)
Greetings all,
I'm having some trouble writing a menu drive bash script, actually coding the menu part was not difficult however its a problem with a menu option I'm having trouble with.
My menu has 5 options, when the user selects the second option, they are then prompted to enter a number from... (5 Replies)
Hi again :)
This is just a sample whiptail menu.
Works great, but have been trying to get the chosen value into a variable but failing pretty bad...its ther but unsure how to echo it out when needed
#! /bin/bash
#This is the menu
whiptail --title "Menu example" --menu "Choose an... (9 Replies)
Dear Sir,
May I know how do I go about adding the following feature into the script below:
When user enter values other than 1,2,3,4,
a) Message “Wrong entry !!! Pls select 1,2,3 or 4” is displayed
b) The screen is cleared again and the menu is displayed.
#!/bin/bash
clear
var=1... (2 Replies)
Hi,
In the archives I found this:
And this works fine.
$if mode=vi
"\C-0-": digit-argument
TAB: menu-complete
"\e
But what I want is to reverse this. So I want that tab does reverse menu completion and shift tab does normal menu completion.
Can anyone help me with this? Thanks (0 Replies)
Hello,
Been trying to build a menu with whiptail lately. However, my code doesn't seems to be working even though when i compared to other similar code they looks the same.
#!/bin/bash
clear
whiptail --msgbox "Entering networking sub-menu" 20 78
whiptail --title Networking --menu... (8 Replies)
Ever since I added these two code blocks to my bash menu it just opens and closes right away. I use a batch file that worked fine until these codes were added and I am not sure what is wrong.
Basically, what I am trying to do in the additional section is if the answer is "Y" then it goes back... (13 Replies)
We have a simple menu with prompt of menu numbers to user.
It is still under construction.
Is there a way to "count" the menu choices so the prompt maximum count can be changed dynamically?
See attached TODO note in code
read_options(){
local choice
# the... (7 Replies)
Hi, I'm new to bash, and have an example menu script using Zenity. It works fine if the user enters A B or C, but if the user enters nothing, I can only figure out how to exit the script. How do I get the menu to reappear if no input is selected?
The script is:
title="Select example"... (2 Replies)
Discussion started by: allen11
2 Replies
LEARN ABOUT REDHAT
info
INFO(1) User Commands INFO(1)NAME
info - read Info documents
SYNOPSIS
info [OPTION]... [MENU-ITEM...]
DESCRIPTION
Read documentation in Info format.
OPTIONS --apropos=STRING
look up STRING in all indices of all manuals.
-d, --directory=DIR
add DIR to INFOPATH.
--dribble=FILENAME
remember user keystrokes in FILENAME.
-f, --file=FILENAME
specify Info file to visit.
-h, --help
display this help and exit.
--index-search=STRING
go to node pointed by index entry STRING.
-n, --node=NODENAME
specify nodes in first visited Info file.
-o, --output=FILENAME
output selected nodes to FILENAME.
-R, --raw-escapes
don't remove ANSI escapes from man pages.
--restore=FILENAME
read initial keystrokes from FILENAME.
-O, --show-options, --usage
go to command-line options node.
--subnodes
recursively output menu items.
--vi-keys
use vi-like and less-like key bindings.
--version
display version information and exit.
The first non-option argument, if present, is the menu entry to start from; it is searched for in all `dir' files along INFOPATH. If it is
not present, info merges all `dir' files and shows the result. Any remaining arguments are treated as the names of menu items relative to
the initial node visited.
EXAMPLES
info show top-level dir menu
info emacs
start at emacs node from top-level dir
info emacs buffers
start at buffers node within emacs manual
info --show-options emacs
start at node with emacs' command line options
info -f ./foo.info
show file ./foo.info, not searching dir
REPORTING BUGS
Email bug reports to bug-texinfo@gnu.org, general questions and discussion to help-texinfo@gnu.org. Texinfo home page:
http://www.gnu.org/software/texinfo/
COPYRIGHT
Copyright (C) 2002 Free Software Foundation, Inc. There is NO warranty. You may redistribute this software under the terms of the GNU
General Public License. For more information about these matters, see the files named COPYING.
info 4.3 November 2002 INFO(1)
03-27-2015
.