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Full Discussion: Error removed from file
Top Forums Shell Programming and Scripting Error removed from file Post 302939228 by RudiC on Tuesday 24th of March 2015 03:43:37 AM
Old 03-24-2015
When I run my proposal on your two attachments, I think it's OK:
Code:
awk '/variantchecker/ {r[$1]} FNR==NR {next} !($1 in r)' /tmp/12_name.txt /tmp/12.txt
NM_004004.5:c.79G>A

You don't capture the output in a file; mayhap you're working on the original unaltered file?

Last edited by RudiC; 03-26-2015 at 07:45 PM..
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PTS_SOURCE(1)						       AFS Command Reference						     PTS_SOURCE(1)

NAME
pts_source - Read pts commands from a file SYNOPSIS
pts source [-file] <file name> [-cell] <cell name> [-noauth] [-localauth] [-force] pts so [-f] <file name> [-c] <cell name> [-n] [-l] [-f] DESCRIPTION
The pts source runs commands from a file as if they were typed in pts interactive mode. The command can be run from the command line or interactively. CAUTIONS
Prior to OpenAFS 1.4.5 and OpenAFS 1.5.23, the pts source command was only available on Unix or Linux and when OpenAFS was compiled with the supergroups option (disabled by default). As of OpenAFS 1.4.5 and 1.5.23, it is always available. OPTIONS
pts source takes the following options: -cell <cell name> Names the cell in which to run the command. For more details, see pts(1). -force Enables the command to continue executing as far as possible when errors or other problems occur, rather than halting execution at the first error. -help Prints the online help for this command. All other valid options are ignored. -localauth Constructs a server ticket using a key from the local /etc/openafs/server/KeyFile file. Do not combine this flag with the -cell or -noauth options. For more details, see pts(1). -noauth Assigns the unprivileged identity anonymous to the issuer. For more details, see pts(1). OUTPUT
This command shows the output of each command in the file as if it were run normally. EXAMPLES
Here is an example of using pts source in a pts interactive session: % echo examine admin > /tmp/commands.txt % pts interactive pts> source /tmp/commands.txt Name: admin, id: 1, owner: system:administrators, creator: anonymous, membership: 2, flags: S----, group quota: 20. pts> quit % SEE ALSO
pts(1), pts_interactive(1), pts_quit(1), pts_sleep(1) COPYRIGHT
Copyright 2007 Jason Edgecombe <jason@rampaginggeek.com> This documentation is covered by the BSD License as written in the doc/LICENSE file. This man page was written by Jason Edgecombe for OpenAFS. OpenAFS 2014-04-08 PTS_SOURCE(1)
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