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Shell Programming and Scripting
Multiple input and save in windows format
Post 302938860 by cmccabe on Thursday 19th of March 2015 02:57:22 PM
03-19-2015
Code:
printf "%s\n" "$variant" > c:/Users/cmccabe/Desktop/Python27/$id.txt # add transcript sed -i '$a NM_004004.5:'c:/Users/cmccabe/Desktop/Python27/$id.txt printf "NM_004004.5:%s\n" "$variant" > c:/Users/cmccabe/Desktop/Python27/$id.txt
the printf re-orders that to NM_004004.5:c.79G>A and saves that file in the python directory. Probably not the most efficient, but I will take your advice and work on it.
Out of curiosity do you find more scientists, especially genomic specialists, learning to program. Just curious because the data is huge and bioinformatics is becoming more important. Thank you
.---------- Post updated at 01:57 PM ---------- Previous update was at 01:42 PM ----------
Maybe:
Code:
gjb2() {
printf "\n\n"
printf "What is the id of the patient getting GJB2 analysis : "; read id
printf "Enter variant(s): "; read variant
[ -z "$id" ] && printf "\n No ID supplied. Leaving match function." && sleep 2 && return
[ "$id" = "end" ] && printf "\n Leaving match function." && sleep 2 && return
printf "NM_004004.5:%s\n" "$variant" > c:/Users/cmccabe/Desktop/Python27/$id.txt
while true
do
IFS="," read -a TArr <<<"$variant"
echo ${#TArr[@]}
2
echo ${TArr[@]}
$variant
done
add2text ${id}.txt
gjb2name
}.|
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LEARN ABOUT PHP
variant_fix
VARIANT_FIX(3) 1 VARIANT_FIX(3) variant_fix - Returns the integer portion of a variant SYNOPSIS
mixed variant_fix (mixed $variant) DESCRIPTION
Gets the integer portion of a variant. PARAMETERS
o $variant - The variant. Note As with all the variant arithmetic functions, the parameters for this function can be either a PHP native type (integer, string, floating point, boolean or NULL), or an instance of a COM, VARIANT or DOTNET class. PHP native types will be converted to variants using the same rules as found in the constructor for the "VARIANT" class. COM and DOTNET objects will have the value of their default property taken and used as the variant value. The variant arithmetic functions are wrappers around the similarly named functions in the COM library; for more information on these functions, consult the MSDN library. The PHP functions are named slightly differently; for example variant_add(3) in PHP cor- responds to VarAdd() in the MSDN documentation. RETURN VALUES
If $variant is negative, then the first negative integer greater than or equal to the variant is returned, otherwise returns the integer portion of the value of $variant. NOTES
Warning This documentation is based on the MSDN documentation; it appears that this function is either the same as variant_int(3), or that there is an error in the MSDN documentation. SEE ALSO
variant_int(3), variant_round(3), floor(3), ceil(3), round(3). PHP Documentation Group VARIANT_FIX(3)