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Full Discussion: Script almost works... one error
Top Forums Shell Programming and Scripting Script almost works... one error Post 302936828 by carborane on Saturday 28th of February 2015 08:41:07 AM
Old 02-28-2015
Script almost works... one error
Helo, i have written a bash script for running my calculations. anyway, according to shellcheck the error is somewhere in the while loop or in the if condition.

so the idea of this script is:
submit a job with a name.
while it is in the queue it has a job ID number.
after the job is done i want to proceed with further ORDERS, for this i need a while loop and a if condition

the script:

Code:
#!/bin/bash -l

#Name of the job gets defined
my_job_name='NEB3'
#Name of the folder is defined.
calcname='3rd_NEB-NH-off_to_BHNH-ortho'


[
#creating job directories etc.
]

cd /job_path/NEB_jobs/jobf_${my_job_name}
sbatch job_${my_job_name}

#Id of the job in the queue is registered
my_id=squeue -u myname | sed -n "/${my_job_name}/ {s/[\ ].*//; p}"


while sleep 30; do
        if [ "${my_id}" != squeue -u myname | sed -n "/${my_job_name}/ {s/[\ ].*//; p}" ]; then
        break
done


#cp folders 
#further ORDERS


with this order:
Code:
squeue -u myname | sed -n "/${my_job_name}/ {s/[\ ].*//; p}"

i receive the job id in numbers when i type in the shell. yet i dont know if these numbers are stored as a string or integers.

with regards

---------- Post updated at 08:41 AM ---------- Previous update was at 07:40 AM ----------

so now i've changed the while loop and it works almost:
Code:
#!/bin/bash -l

#Name of the job gets defined
my_job_name='NEB3'
#Name of the folder is defined.
calcname='3rd_NEB-NH-off_to_BHNH-ortho'


[
#creating job directories etc.
]

cd /job_path/NEB_jobs/jobf_${my_job_name}
sbatch job_${my_job_name}

#Id of the job in the queue is registered
my_id=squeue -u myname | sed -n "/${my_job_name}/ {s/[\ ].*//; p}"


while sleep 30; do
        temp_id=&(squeue -u myname | sed -n "/${my_job_name}/ {s/[\ ].*//; p}")
                if [ "${my_id}" != "${temp_id}" ]; then
                        break
                fi
done


FOLLOWING_ORDERS


what does not work, are the FOLOWING_ORDERDS. Does "break" in the while loop terminate the wole bashscrpit?
Last edited by carborane; 02-28-2015 at 08:47 AM..
 

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LEARN ABOUT LINUX

script

SCRIPT(1)						    BSD General Commands Manual 						 SCRIPT(1)

NAME

     script -- make typescript of terminal session

SYNOPSIS

     script [-a] [-c COMMAND] [-e] [-f] [-q] [-t] [file]

DESCRIPTION

     Script makes a typescript of everything printed on your terminal.	It is useful for students who need a hardcopy record of an interactive
     session as proof of an assignment, as the typescript file can be printed out later with lpr(1).

     If the argument file is given, script saves all dialogue in file.	If no file name is given, the typescript is saved in the file typescript.

     Options:

     -a      Append the output to file or typescript, retaining the prior contents.

     -c COMMAND
	     Run the COMMAND rather than an interactive shell.	This makes it easy for a script to capture the output of a program that behaves
	     differently when its stdout is not a tty.

     -e      Return the exit code of the child process. Uses the same format as bash termination on signal termination exit code is 128+n.

     -f      Flush output after each write. This is nice for telecooperation: One person does `mkfifo foo; script -f foo' and another can super-
	     vise real-time what is being done using `cat foo'.

     -q      Be quiet.

     -t      Output timing data to standard error. This data contains two fields, separated by a space. The first field indicates how much time
	     elapsed since the previous output. The second field indicates how many characters were output this time. This information can be used
	     to replay typescripts with realistic typing and output delays.

     The script ends when the forked shell exits (a control-D to exit the Bourne shell (sh(1)), and exit, logout or control-d (if ignoreeof is not
     set) for the C-shell, csh(1)).

     Certain interactive commands, such as vi(1), create garbage in the typescript file.  Script works best with commands that do not manipulate
     the screen, the results are meant to emulate a hardcopy terminal.

ENVIRONMENT

     The following environment variable is utilized by script:

     SHELL  If the variable SHELL exists, the shell forked by script will be that shell. If SHELL is not set, the Bourne shell is assumed. (Most
	    shells set this variable automatically).

SEE ALSO

     csh(1) (for the history mechanism), scriptreplay(1).

HISTORY

     The script command appeared in 3.0BSD.

BUGS

     Script places everything in the log file, including linefeeds and backspaces.  This is not what the naive user expects.

AVAILABILITY

     The script command is part of the util-linux package and is available from ftp://ftp.kernel.org/pub/linux/utils/util-linux/.

Linux								   July 30, 2000							     Linux
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