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Top Forums UNIX for Dummies Questions & Answers Compare file1 and file2, print matching lines in same order as file1 Post 302934681 by pathunkathunk on Tuesday 10th of February 2015 12:39:39 AM
Old 02-10-2015
Compare file1 and file2, print matching lines in same order as file1

I want to print only the lines in file2 that match file1, in the same order as they appear in file 1

file1
Quote:
c2
c23
c14
c22
file2
Quote:
c14 CGAGGCTG
c2 CAGAGAGG
c20 CTCGACTC
c22 CGAGGCTG
c23 AAGAGGCA
desired output:
Quote:
c2 CAGAGAGG
c23 AAGAGGCA
c14 CGAGGCTG
c22 CGAGGCTG
I'm getting the lines to match
Code:
awk 'FNR==NR {a[$1]++}; FNR!=NR && a[$1]' file1 file2

but they are in sorted order, which is not what I want:
Quote:
c14 CGAGGCTG
c2 CAGAGAGG
c22 CGAGGCTG
c23 AAGAGGCA
Can anyone help me out?
 

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DIFF(1) 						      General Commands Manual							   DIFF(1)

NAME
diff - differential file comparator SYNOPSIS
diff [ -efbh ] file1 file2 DESCRIPTION
Diff tells what lines must be changed in two files to bring them into agreement. If file1 (file2) is `-', the standard input is used. If file1 (file2) is a directory, then a file in that directory whose file-name is the same as the file-name of file2 (file1) is used. The normal output contains lines of these forms: n1 a n3,n4 n1,n2 d n3 n1,n2 c n3,n4 These lines resemble ed commands to convert file1 into file2. The numbers after the letters pertain to file2. In fact, by exchanging `a' for `d' and reading backward one may ascertain equally how to convert file2 into file1. As in ed, identical pairs where n1 = n2 or n3 = n4 are abbreviated as a single number. Following each of these lines come all the lines that are affected in the first file flagged by `<', then all the lines that are affected in the second file flagged by `>'. The -b option causes trailing blanks (spaces and tabs) to be ignored and other strings of blanks to compare equal. The -e option produces a script of a, c and d commands for the editor ed, which will recreate file2 from file1. The -f option produces a similar script, not useful with ed, in the opposite order. In connection with -e, the following shell program may help maintain multiple versions of a file. Only an ancestral file ($1) and a chain of version-to-version ed scripts ($2,$3,...) made by diff need be on hand. A `latest version' appears on the standard output. (shift; cat $*; echo '1,$p') | ed - $1 Except in rare circumstances, diff finds a smallest sufficient set of file differences. Option -h does a fast, half-hearted job. It works only when changed stretches are short and well separated, but does work on files of unlimited length. Options -e and -f are unavailable with -h. FILES
/tmp/d????? /usr/lib/diffh for -h SEE ALSO
cmp(1), comm(1), ed(1) DIAGNOSTICS
Exit status is 0 for no differences, 1 for some, 2 for trouble. BUGS
Editing scripts produced under the -e or -f option are naive about creating lines consisting of a single `.'. DIFF(1)
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