I have a big file with "|" delimiter. I want to delete all the records that have 'abc' in the 2nd field. How can i do that? I am not abe to open it in VI that is why i need to do it from outside. Please suggest (6 Replies)
All,
We receive a file with a large no of records (records can vary) and we have to split it into two files based on another file. e.g.
File1:
UHDR 2008112
"25187","00000022","00",21-APR-1991,"" ,"D",-000000519,+0000000000,"C", ,+000000000,+000000000,000000000,"2","" ... (2 Replies)
Newb here trying to figure this one out. :confused:
I am trying to create a SED (or some other idea) line that will replace the data field if the original text is seen in a separate text file. The lookup file would be line delimted.
For example: sed 's/<if in file>/YES/'
File structure:... (3 Replies)
Hi,
I am looking for an awk script which should help me to meet the following requirement:
File1 has records in following format
INF: FAILEd RECORD AB1234
INF: FAILEd RECORD PQ1145
INF: FAILEd RECORD AB3215
INF: FAILEd RECORD AB6114
............................ (2 Replies)
Need unix commands to delete records from one file if the same record present in another file...
just like join ... if the record present in both files.. delete from first file or delete the particular record and write the unmatched records to new file..
tried with grep and while... (6 Replies)
hello guys
Please help me with the below issue
I have two files one base file another lookupfile
base file
abc-001
bcd-001
cde-001
Lookupfile
abc-001|11|12
abc-001|11|12
abc-001|11|12 (6 Replies)
Hi,
To load a big file in a table,I have a make sure that all rows in the file has same number of the columns .
So in my file if I am getting any rows which have columns not equal to 6 , I need to delete it . Delimiter is space and columns are optionally enclosed by "".
This can be ... (1 Reply)
Hi Folks,
I am a novice and need to build a script in bash. I have 2 text files data.txt file is big file, column 2 is the we need to search and delete in the output. The filter file contains the rows to be deleted.
Data.txt
state city zone
Alabama Huntsville 4
California SanDiego 3... (3 Replies)
Discussion started by: tech_frk
3 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)