Hi,
I have a file named status.txt that looks like the file below. What I want to do is to delete the part <status> and </status> and just leave the number and print each number per line. How can I do it? If I will use sed or awk how can I do it? I tried with sed but it didn't work. Maybe I... (8 Replies)
i have 200000bytes size of a unix file i need to delete some text between two strings recursively using a loop with sed or awk . these two strings are : 1st string getting from a file :::2 nd string is fi...its constant . can anyone help me sed -n'/<1 st string >/,/fi/' <input_filename> is the... (2 Replies)
HI,
if a String is present in file1.txt, i want to delete that String from file2.txt.
How can i do this??
I am sure that the file1.txt is a subset of file2.txt. (2 Replies)
Hello guys,
should be a very easy questn for you:
I need to delete strings in file1 based on the list of strings in file2.
like file2:
word1_word2_
word3_word5_
word3_word4_
word6_word7_
file1:
word1_word2_otherwords..,word3_word5_others... (7 Replies)
Been searching for about 3 hours for similar functionality that I can get examples of how to output text from variables into certain locations in a file. I would like to incorporate this into a script. I have not been able to find a command example that does it all in one method. I find part of... (1 Reply)
The question is not as simple as the title... I have a file, it looks like this
<string name="string1">RZ-LED</string>
<string name="string2">2.0</string>
<string name="string2">Version 2.0</string>
<string name="string3">BP</string>
I would like to check for duplicate entries of... (11 Replies)
Hello All,
this is my first post so I don't know if I am doing this right.
I would like to append entries from a series of strings (contained in a text file) consecutively at the end of specifically labeled lines in another file.
As an example:
- the file that contains the values to be... (3 Replies)
hi, i have a big file like this:
>s31 length=12 numreads=6 gene=isotig454 status=igo
ldfddfdfdfdkkkkkkfdfdkkkksdfdkkkkkkkkkksdfd
dfdfdfldfdkdffdlfddflfdjkkkkkkfdgkkgfhghfgkkk
ldfddfdfdfdkkkkkkfdfdkkkksdfdkkkkkkkkkksdfd
dfdfdfldfdkdffdlfddflfdjkkkkkkfdgkkgfhghfgkkk
>c2 length =344... (4 Replies)
I will appreciate if you help me here in this script in Solaris Enviroment.
Scenario:
i have 2 files :
1) /tmp/TRANSACTIONS_DAILY_20180730.txt:
201807300000000004
201807300000000005
201807300000000006
201807300000000007
201807300000000008
2)... (10 Replies)
Discussion started by: teokon90
10 Replies
LEARN ABOUT DEBIAN
fasta_formatter
FASTA_FORMATTER(1) User Commands FASTA_FORMATTER(1)NAME
fasta_formatter - changes the width of sequences line in a FASTA file
DESCRIPTION
usage: fasta_formatter [-h] [-i INFILE] [-o OUTFILE] [-w N] [-t] [-e] Part of FASTX Toolkit 0.0.13.2 by gordon@cshl.edu
[-h] = This helpful help screen.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-w N] = max. sequence line width for output FASTA file.
When ZERO (the default), sequence lines will NOT be wrapped - all nucleotides of each sequences will appear on a single line (good
for scripting).
[-t] = Output tabulated format (instead of FASTA format).
Sequence-Identifiers will be on first column, Nucleotides will appear on second column (as single line).
[-e] = Output empty sequences (default is to discard them).
Empty sequences are ones who have only a sequence identifier, but not actual nucleotides.
Input Example:
>MY-ID AAAAAGGGGG CCCCCTTTTT AGCTN
Output example with unlimited line width [-w 0]:
>MY-ID AAAAAGGGGGCCCCCTTTTTAGCTN
Output example with max. line width=7 [-w 7]:
>MY-ID AAAAAGG GGGTTTT TCCCCCA GCTN
Output example with tabular output [-t]:
MY-ID AAAAAGGGGGCCCCCTTTTAGCTN
example of empty sequence: (will be discarded unless [-e] is used)
>REGULAR-SEQUENCE-1 AAAGGGTTTCCC >EMPTY-SEQUENCE >REGULAR-SEQUENCE-2 AAGTAGTAGTAGTAGT GTATTTTATAT
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.
fasta_formatter 0.0.13.2 May 2012 FASTA_FORMATTER(1)