Not sure if my attempt below is close but I am trying to match $1 of gene.txt to $2 of medicalexome.txt,
and if there is a match then $2 $1 are copied to a new result.txt which is tab-delimited. If no match is found then
$1 of gene.txt and "No Match" are copied to the result file.
Code:
awk 'FNR==NR { E[$1]=$2 ; next }
{ $1=$1 in E?E[$1]:"No Match" } 1' medicalexome.txt gene.txt > result.txt OFS="/t"
So, the first name in gene.txt is A2m and that does not match anything in medicalexome.txt so A2M No Match is copied to result.txt
the 213 name in gene.txt is ALK and that matches medicalexome.txt so ALK 105590 is copied to result.txt
Thank you .
Moderator's Comments:
CODE tags are needed around sample input, output, and code; not around descriptive text explaining what the tagged segments contain.
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Discussion started by: axis88
4 Replies
LEARN ABOUT DEBIAN
ecaccess-file-move
ECACCESS-FILE-MOVE(1p) User Contributed Perl Documentation ECACCESS-FILE-MOVE(1p)NAME
ecaccess-file-move - Move or Rename ECaccess Files
SYNOPSIS
ecaccess-file-move -version|-help|-manual
ecaccess-file-move [-debug] source-ecaccess-file target-ecaccess-file
DESCRIPTION
Allow moving an ECaccess File. When the move occurs within the same ECaccess File System then it is a rename. When the move occurs across
two different ECaccess File Systems then first a copy is done and then a delete of the original file is done (e.g. similar to ecaccess-
file-copy ... -erase).
The source-ecaccess-file and target-ecaccess-file are in the form [domain:][/user-id/]path. Please read the "Shell commands -> File
Management" section of the "ecaccess" guide for more information on the ECaccess File System.
ARGUMENTS
source-ecaccess-file
The source ECaccess File name.
target-ecaccess-file
The target ECaccess File name.
OPTIONS -version
Display version number and exits.
-help Print a brief help message and exits.
-manual Prints the manual page and exits.
-debug Display the SOAP messages exchanged.
EXAMPLES
ecaccess-file-move ec:test1.txt ec:test2.txt
Rename the test1.txt file in the ECFS directory of the authenticated user in test2.txt.
ecaccess-file-move ec:test1.txt home:test2.txt
Copy the test1.txt file from the ECFS directory of the authenticated user to the test2.txt file in the $HOME directory of the authenticated
user, then delete the test1.txt file from ECFS.
SEE ALSO
ecaccess-file-delete, ecaccess-file-get, ecaccess-file-mget, ecaccess-file-modtime, ecaccess-file-mput, ecaccess-file-rmdir, ecaccess-file-
copy, ecaccess-file-dir, ecaccess-file-mdelete, ecaccess-file-mkdir, ecaccess-file-chmod, ecaccess-file-put, ecaccess-file-size and
ecaccess.
perl v5.14.2 2012-04-16 ECACCESS-FILE-MOVE(1p)
12-19-2014
.