Sorry, I didnt mention that there are two input files in which I dont know where to fit the second file.
The first file is chr1_GEN2bim. It has this format. Note that everything at first column is 1 because it is chr1_GEN2bim
so if it is chr2_GEN2bim , it would be like the following, also note that everything at first column is 2.
etc. All the files chr1_GEN2bim, chr2_GEN2bim, chr3_GEN2bim, ...chr22_GEN2bim are on the working directory
For the second file (following table), it is where I want to extract from column 1 and 2.
What I actually want to do is read A and B simultaneously from file 2.
A is the value at the first column, while B is at the second column both from second file
I am a newbie to awk and c programming, however am not a unix newbie. However, I do need help with a kshell script I am writing. It is almost complete, the last step is killing me. Any help would be greatly appreciated. What I am trying to do is cat a text file that has usernames. Then, using... (2 Replies)
Hi All,
I am trying to pass a parameter to AWK on my KSH shell prompt as below.
var1=2
echo $var1
awk -v var2=${var1} '{print var2}' testfile.txt
I am passing the input file (testfile) to awk to get some o/p. It is having 10 records.
When I run AWK, it is throwing the following errors... (1 Reply)
Hi,
I am trying to print a specific line in a file through sed or awk. The line number will be passed as a parameter from the previous step. My code looks as below.
TEMP3=`sed -n '$TEMP2p' $FILEPATH/Log.txt`
$TEMP2, I am getting from the previous step which is a numerical value(eg:3).
... (2 Replies)
I have an for loop that reads the following file
cat param.cfg
val1:env1:opt1
val2:env2:opt2
val3:env3:opt3
val4:env4:opt4
.
.
The for loop extracts the each line of the file so that at any one point, the value of i is
val1:env1:opt1 etc...
I would like to extract each... (19 Replies)
I have to replace the pattern found in one file in another file with null/empty "" if found on the fields 3 or 4 ONLY
File 1
====
10604747|Mxdef|9999|9999|9999|2012-03-04 00:00:59
10604747|Mcdef|8888|9999|8888|2012-03-04 00:00:59
.
.
.
File 2
====
9999
8888
.
.
.
Expected... (7 Replies)
Learning, stumbling! My progress in shell scripting is slow. Now I have this doubt:
I have the following file (users.txt):
AU0909,on
AU0309,off
AU0209,on
AU0109,off
And this file (userson.txt)
AU0909
AU0209
AU0109
AU0309
I just want to set those users on userson.txt to "off" in... (14 Replies)
i am passing input parameter 'one_two' to the script , the script output should display the result as below
one_1two
one_2two
one_3two
if
then
echo " Usage : <$0> <DATABASE> "
exit 0
else
for DB in 1 2 3
do
DBname=`$DATABASE | awk -F "_" '{print $1_${DB}_$2}`
done
fi (5 Replies)
Hi,
I have a situation where I need to create a SQL statement using Unix script for each value in first field (ID). The file looks like this.
Id,TARGET_FIELD_NAME,SOURCE_FIELD_NAME
1,Test_Rate,Field1
1,Test_Factor,Field2
1,Test_Size,Field3
2,Test_Rate,Field4
2,Test_Factor,Field5... (3 Replies)
I have a shell script (.sh) and I want to pass a parameter value to the awk command but I am getting exception, please assist.
diff=$1$2.diff
id=$2 new=new_$diff
echo "My id is $1"
echo "I want to sync for user account $id"
##awk command I am using is as below
cat $diff |... (1 Reply)
Hi All,
I am new to AWK programming. I have the following for loop in my awk program.
cat printhtml.awk:
BEGIN
-------- <some code here>
END{
----------<some code here>
for(N=0; N<H; N++)
{
for(M=5; M<D; M++) print "\t" D "";
}
-----
}
... (2 Replies)
Discussion started by: ctrld
2 Replies
LEARN ABOUT LINUX
npm-run-script
NPM-RUN-SCRIPT(1)NPM-RUN-SCRIPT(1)NAME
npm-run-script - Run arbitrary package scripts
SYNOPSIS
npm run-script <command> [--silent] [-- <args>...]
alias: npm run
DESCRIPTION
This runs an arbitrary command from a package's "scripts" object. If no "command" is provided, it will list the available scripts.
run[-script] is used by the test, start, restart, and stop commands, but can be called directly, as well. When the scripts in the package
are printed out, they're separated into lifecycle (test, start, restart) and directly-run scripts.
As of ` https://blog.npmjs.org/post/98131109725/npm-2-0-0, you can use custom arguments when executing scripts. The special option -- is
used by getopt https://goo.gl/KxMmtG to delimit the end of the options. npm will pass all the arguments after the -- directly to your
script:
npm run test -- --grep="pattern"
The arguments will only be passed to the script specified after npm run and not to any pre or post script.
The env script is a special built-in command that can be used to list environment variables that will be available to the script at run-
time. If an "env" command is defined in your package, it will take precedence over the built-in.
In addition to the shell's pre-existing PATH, npm run adds node_modules/.bin to the PATH provided to scripts. Any binaries provided by
locally-installed dependencies can be used without the node_modules/.bin prefix. For example, if there is a devDependency on tap in your
package, you should write:
"scripts": {"test": "tap test/*.js"}
instead of
"scripts": {"test": "node_modules/.bin/tap test/*.js"}
to run your tests.
The actual shell your script is run within is platform dependent. By default, on Unix-like systems it is the /bin/sh command, on Windows it
is the cmd.exe. The actual shell referred to by /bin/sh also depends on the system. As of `
https://github.com/npm/npm/releases/tag/v5.1.0 you can customize the shell with the script-shell configuration.
Scripts are run from the root of the module, regardless of what your current working directory is when you call npm run. If you want your
script to use different behavior based on what subdirectory you're in, you can use the INIT_CWD environment variable, which holds the full
path you were in when you ran npm run.
npm run sets the NODE environment variable to the node executable with which npm is executed. Also, if the --scripts-prepend-node-path is
passed, the directory within which node resides is added to the PATH. If --scripts-prepend-node-path=auto is passed (which has been the
default in npm v3), this is only performed when that node executable is not found in the PATH.
If you try to run a script without having a node_modules directory and it fails, you will be given a warning to run npm install, just in
case you've forgotten.
You can use the --silent flag to prevent showing npm ERR! output on error.
You can use the --if-present flag to avoid exiting with a non-zero exit code when the script is undefined. This lets you run potentially
undefined scripts without breaking the execution chain.
SEE ALSO
o npm help 7 scripts
o npm help test
o npm help start
o npm help restart
o npm help stop
o npm help 7 config
January 2019 NPM-RUN-SCRIPT(1)