11-13-2014
Hi.
Perhaps this will be useful:
Quote:
Beginning Perl for Bioinformatics
An Introduction to Perl for Biologists
By James Tisdall
Publisher: O'Reilly Media
Final Release Date: October 2001
Pages: 386
3.8Read 8 ReviewsWrite a Review
With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab ...
More at
Beginning Perl for Bioinformatics - O'Reilly Media , however, it looks a bit old me ... cheers, drl
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
I need to extract a column from a tab delimited text file based on the string in the first row. (i.e. extract the column labeled "reaction_time"). I know that this can be done with awk by determining the column #, but I want to do it based on a search for the string b/c the column number changes... (3 Replies)
Discussion started by: t27
3 Replies
2. UNIX for Advanced & Expert Users
This is the data file that I have
21879, 0, 22, 58, 388
0, -1, 300, 1219172589765, 1708, 0, 200, 21891, 0, 0, 33, 309
0, -1, 300, 1219172591478, 1768, 0, 200, 22505, 0, 0, 33, 339
0, -1, 300, 1219172593251, 1738, 0, 200, 21888, 0, 1, 33, 308
0, -1, 300, 1219172594995, 633, 0, 200, 24878,... (2 Replies)
Discussion started by: pmallur
2 Replies
3. Shell Programming and Scripting
Hi I have a csv file which is below
A,5
B,6
C,10
D,7
I want the values who's second column is greater than 7
say
C,10
D,7
Help me please...
Thanks,
Maruth (3 Replies)
Discussion started by: maruthavanan
3 Replies
4. Shell Programming and Scripting
i have a file - it will be in sorted order on column 1
abc 0 1
abc 2 3
abc 3 5
def 1 7
def 0 1
--------
i'd like (awk maybe?) to get the results (any ideas)???
abc 5 9
def 1 8 (2 Replies)
Discussion started by: jjoe
2 Replies
5. Emergency UNIX and Linux Support
Hi guys,
I need help in making a command to find some data.
I have multiple files in which multiple records are present.. Each record is separated with a carriage return and in each record there are multiple fields with each field separated by "|"
what i want is that I want to extract... (1 Reply)
Discussion started by: m_usmanayub
1 Replies
6. Shell Programming and Scripting
Hello,
I have a huge file with many columns . I want to use the names of the columns to print columns to another file.
for example
file.txt
COLA COLB COLC COLD
1 2 3 5
3 5 6 9
If I give name for multiple columns to the code:... (5 Replies)
Discussion started by: ryan9011
5 Replies
7. Shell Programming and Scripting
I have a LOG file which looks like this
Import started at: Mon Jul 23 02:13:01 EDT 2012
Initialization completed in 2.146 seconds.
--------------------------------------------------------------------------------
--
Import summary for Import item: PolicyInformation... (8 Replies)
Discussion started by: biztank
8 Replies
8. Shell Programming and Scripting
I have two files.
FileA.txt
30910 rs7468327
36587 rs10814410
91857 rs9408752
105797 rs1133715
146659 rs2262038
152695 rs2810979
181843 rs3008128
182129 rs3008131
192118 rs3008170
FileB.txt
30910 1.9415219673 0
36431 1.3351312477 0.0107191428
36587 1.3169171182... (2 Replies)
Discussion started by: genehunter
2 Replies
9. Shell Programming and Scripting
Hi to all,
I have two files. File1 has no header, two columns:
sample1 A
sample2 B
sample3 B
sample4 C
sample5 A
sample6 D
sample7 D
File2 has a header, except for the first 3 columns (chr,start,end). "sample1" is the header for the 4th ,5th ,6th columns, "sample2" is the header... (4 Replies)
Discussion started by: aec
4 Replies
10. Shell Programming and Scripting
Hi,
I have a requirement where in I need to insert delimiters before the last column of the total delimiters is less than a specified number.
Say if the delimiters is less than 139, I need to insert 2 columns ( with blanks) before the last field
awk -F 'Ç' '{ if (NF-1 < 139)} END { "Insert 2... (5 Replies)
Discussion started by: arunkesi
5 Replies
LEARN ABOUT DEBIAN
perl::critic::policy::codelayout::requiretidycode
Perl::Critic::Policy::CodeLayout::RequireTidyCode(3pm) User Contributed Perl Documentation Perl::Critic::Policy::CodeLayout::RequireTidyCode(3pm)
NAME
Perl::Critic::Policy::CodeLayout::RequireTidyCode - Must run code through perltidy.
AFFILIATION
This Policy is part of the core Perl::Critic distribution.
DESCRIPTION
Conway does make specific recommendations for whitespace and curly-braces in your code, but the most important thing is to adopt a
consistent layout, regardless of the specifics. And the easiest way to do that is to use Perl::Tidy. This policy will complain if you're
code hasn't been run through Perl::Tidy.
CONFIGURATION
This policy can be configured to tell Perl::Tidy to use a particular perltidyrc file or no configuration at all. By default, Perl::Tidy is
told to look in its default location for configuration. Perl::Critic can be told to tell Perl::Tidy to use a specific configuration file
by putting an entry in a .perlcriticrc file like this:
[CodeLayout::RequireTidyCode]
perltidyrc = /usr/share/perltidy.conf
As a special case, setting "perltidyrc" to the empty string tells Perl::Tidy not to load any configuration file at all and just use
Perl::Tidy's own default style.
[CodeLayout::RequireTidyCode]
perltidyrc =
SEE ALSO
Perl::Tidy
AUTHOR
Jeffrey Ryan Thalhammer <jeff@imaginative-software.com>
COPYRIGHT
Copyright (c) 2005-2011 Imaginative Software Systems. All rights reserved.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. The full text of this license
can be found in the LICENSE file included with this module.
perl v5.14.2 2012-06-07 Perl::Critic::Policy::CodeLayout::RequireTidyCode(3pm)